1. Introduction
Estimating the dissipation of turbulent kinetic energy ϵ is core to the study of turbulence in aquatic flows as the rate of mixing K is related to the size of the largest turbulent overturns L and ϵ via, for example, Richardson’s mixing law















Example spectral observations spanning from
Citation: Journal of Atmospheric and Oceanic Technology 33, 4; 10.1175/JTECH-D-15-0218.1
2. Data analysis procedures
a. Processing raw data
We briefly summarize the processing steps applied to the raw turbulent velocity gradient data prior to estimating ϵ from the shear spectral observations (see Moum et al. 1995; Lueck et al. 2002, for more details). The same preprocessing applies whether the spectra are fitted or integrated to obtain ϵ, except that with fitting the spectral averaging must result in constant degrees of freedom across the spectra. The shear signal is usually despiked before estimating the “raw” spectra and portions of the signal are discarded when the angle of attack of the sensor’s tip with respect to the mean flow is large (Macoun and Lueck 2004). Segments where the mean flow is highly variable (nonstationary) are also excluded.
To compute the spectra, a segment length from the profile (or time series if the shear probes are moored) must be chosen so that it is sufficiently long to ideally resolve the low k of the viscous subrange or the highest (less anisotropic) k of the inertial subrange. With decreasing ϵ, the turbulence range moves to progressively lower k, such that at
With Taylor’s frozen turbulence hypothesis, the motion-corrected spectra can be converted from frequency to wavenumber space
b. Spectral fitting algorithm
























For short segment lengths (small bin size), such that the lowest k are in the inertial subrange, the wavenumber range identification is equivalent to the integration method, in that it amounts to determining the maximum wavenumber
Before setting

Flowchart delineating the fitting algorithm used to derive
Citation: Journal of Atmospheric and Oceanic Technology 33, 4; 10.1175/JTECH-D-15-0218.1
c. Spectral integrating algorithm
To assess
d. Misfit criteria



3. Field data sources
An oceanographic field study was undertaken on the Australian North West shelf from November 2011 to April 2012. From 5 to 11 April, over 300 vertical microstructure shear profiles (VMP-500, Rockland Scientific) were collected throughout the study region. The VMP recorded data at 512 Hz from many channels: two airfoil velocity shear probes, 3D accelerometers, a pressure sensor, and high-accuracy temperature and conductivity sensors (SBE-3F and SBE-4C from Sea-bird Electronics) and one fast-response temperature sensors (FP07). Drop speeds were generally of order 0.5–0.8 m s−1 with lower drop speeds near the surface and seafloor. For the MLE fitting assessment, we used a subset of 121 profiles collected over a 24-h period on 10 April 2012 close to a site, where a 34-m-long mooring was anchored to the seafloor in 105 m of water (19°41.6′S, 116°06.6′E). Each profile was split into segments of 2048 samples (4 s) that overlapped by 50%. The FFT was estimated on subsets of 512 points with a 50% overlap (seven blocks), yielding spectra with 21 degrees of freedom. The mooring was instrumented with a mixture of velocity and temperature sensors, in addition to a conductivity–temperature sensor. The time-averaged currents were of order 0.25–0.30 m s−1 over the extent of the mooring, while the background stratification was nearly linear with a buoyancy period of about 9 min.
4. Results and assessment
Figure 3 shows example shear spectra that have been both integrated and fitted to obtain independent estimates of ϵ. The viscous dip

(a)–(d) Example corrected shear spectra with increasing ϵ. Both the fitted
Citation: Journal of Atmospheric and Oceanic Technology 33, 4; 10.1175/JTECH-D-15-0218.1
We compare the final ϵ estimates obtained with our integration algorithm

(a) Term
Citation: Journal of Atmospheric and Oceanic Technology 33, 4; 10.1175/JTECH-D-15-0218.1
Figure 4b illustrates how close the initial integrated
To investigate the sensitivity of

(a)–(d) As in Fig. 3, but for large segment bins of the order of 10–12 m to introduce the influence of the mean flow at low k—particularly apparent for the low ϵ example in (a). (e)–(h) The MAD misfit measure and rejection criteria
Citation: Journal of Atmospheric and Oceanic Technology 33, 4; 10.1175/JTECH-D-15-0218.1
We use these excessively long 10–12-m segments (bin sizes) to illustrate the variation in the MAD misfit criterion as a function of the fitted wavenumbers (Figs. 5e–h). For our low ϵ example—the most impacted by the mean flow and instrument noise—the MAD misfit criterion was violated for almost all subsets fitted (Fig. 5e). Only a few fits around 10 cpm did not violate the rejection criteria. These fits also yielded lower ϵ than predicted with our fitting algorithm
5. Conclusions
The maximum likelihood estimator was used to reliably estimate ϵ by fitting a model spectrum, in this case the Nasmyth spectrum, to shear spectral observations. Our estimates agreed with those obtained with the more conventional integration method for
An Australian Research Council Discovery Project (DP 120103036) and an Office of Naval Research Naval International Cooperative Opportunities project (N62909-11-1-7058) funded this work. We thank the people from the Australian Institute of Marine Science, the Naval Research Laboratory, and the University of Western Australia who aided in the collection of the data and the crew of the R/V Solander. In particular, we thank Jeff Book and Ana Rice for reviewing a draft of this manuscript. Anouk Messen also helped in the initial data analysis of the VMP.
REFERENCES
Baumert, H. Z., , Simpson J. , , and Sündermann J. , Eds., 2005: Marine Turbulence: Theories, Observations, and Models; Results of the CARTUM Project. Cambridge University Press, 630 pp.
Bluteau, C. E., , Jones N. L. , , and Ivey G. N. , 2011: Estimating turbulent kinetic energy dissipation using the inertial subrange method in environmental flows. Limnol. Oceanogr. Methods, 9, 302–321, doi:10.4319/lom.2011.9.302.
Doron, P., , Bertuccioli L. , , Katz J. , , and Osborn T. R. , 2001: Turbulence characteristics and dissipation estimates in the coastal ocean bottom boundary layer from PIV data. J. Phys. Oceanogr., 31, 2108–2134, doi:10.1175/1520-0485(2001)031<2108:TCADEI>2.0.CO;2.
Emery, W. J., , and Thomson R. E. , 2001: Data Analysis Methods in Physical Oceanography. 2nd ed. Elsevier Science, 638 pp.
Fer, I., , and Paskyabi M. B. , 2014: Autonomous ocean turbulence measurements using shear probes on a moored instrument. J. Atmos. Oceanic Technol., 31, 474–490, doi:10.1175/JTECH-D-13-00096.1.
Fer, I., , Peterson A. K. , , and Ullgren J. E. , 2014: Microstructure measurements from an underwater glider in the turbulent Faroe Bank Channel overflow. J. Atmos. Oceanic Technol., 31, 1128–1150, doi:10.1175/JTECH-D-13-00221.1.
Geyer, W. R., , Scully M. E. , , and Ralston D. K. , 2008: Quantifying vertical mixing in estuaries. Environ. Fluid Mech., 8, 495–509, doi:10.1007/s10652-008-9107-2.
Goodman, L., , Levine E. R. , , and Lueck R. G. , 2006: On measuring the terms of the turbulent kinetic energy budget from an AUV. J. Atmos. Oceanic Technol., 23, 977–990, doi:10.1175/JTECH1889.1.
Lucas, N., , Simpson J. , , Rippeth T. P. , , and Old C. P. , 2014: Measuring turbulent dissipation using a tethered ADCP. J. Atmos. Oceanic Technol., 31, 1826–1837, doi:10.1175/JTECH-D-13-00198.1.
Lueck, R. G., 2015: Calculating the rate of dissipation of turbulent kinetic energy. Rockland Scientific International Inc. Tech. Note TN-028, 18 pp. [Available online at http://rocklandscientific.com/?wpdmdl=1034.]
Lueck, R. G., , Wolk F. , , and Yamazaki H. , 2002: Oceanic velocity microstructure measurements in the 20th century. J. Oceanogr., 58, 153–174, doi:10.1023/A:1015837020019.
Lumley, J. L., 1965: Interpretation of time spectra measured in high-intensity shear flows. Phys. Fluids, 8, 1056–1062, doi:10.1063/1.1761355.
Macoun, P., , and Lueck R. , 2004: Modeling the spatial response of the airfoil shear probe using different sized probes. J. Atmos. Oceanic Technol., 21, 284–297, doi:10.1175/1520-0426(2004)021<0284:MTSROT>2.0.CO;2.
Moum, J. N., , Gregg M. C. , , Lien R. C. , , and Carr M. E. , 1995: Comparison of turbulence kinetic energy dissipation rate estimates from two ocean microstructure profilers. J. Atmos. Oceanic Technol., 12, 346–366, doi:10.1175/1520-0426(1995)012<0346:COTKED>2.0.CO;2.
Nasmyth, P. W., 1970: Oceanic turbulence. Ph.D. thesis, University of British Columbia, 71 pp., doi:10.14288/1.0084817.
Oakey, N. S., 1982: Determination of the rate of dissipation of turbulent energy from simultaneous temperature and velocity shear microstructure measurements. J. Phys. Oceanogr., 12, 256–271, doi:10.1175/1520-0485(1982)012<0256:DOTROD>2.0.CO;2.
Osborn, T. R., 1974: Vertical profiling of velocity microstructure. J. Phys. Oceanogr., 4, 109–115, doi:10.1175/1520-0485(1974)004<0109:VPOVM>2.0.CO;2.
Pope, S. B., 2000: Turbulent Flows. 1st ed. Cambridge University Press, 770 pp.
Price, J. F., and Coauthors, 1993: Mediterranean outflow mixing and dynamics. Science, 259, 1277–1282, doi:10.1126/science.259.5099.1277.
Ruddick, B., , Anis A. , , and Thompson K. , 2000: Maximum likelihood spectral fitting: The Batchelor spectrum. J. Atmos. Oceanic Technol., 17, 1541–1555, doi:10.1175/1520-0426(2000)017<1541:MLSFTB>2.0.CO;2.
Sreenivasan, K. R., 1995: On the universality of the Kolmogorov constant. Phys. Fluids, 7, 2778–2784, doi:10.1063/1.868656.
Steinbuck, J. V., and Coauthors, 2010: An autonomous open-ocean stereoscopic PIV profiler. J. Atmos. Oceanic Technol., 27, 1362–1380, doi:10.1175/2010JTECHO694.1.
Voulgaris, G., , and Trowbridge J. H. , 1998: Evaluation of the acoustic Doppler velocimeter (ADV) for turbulence measurements. J. Atmos. Oceanic Technol., 15, 272–289, doi:10.1175/1520-0426(1998)015<0272:EOTADV>2.0.CO;2.
Walter, R. K., , Squibb M. E. , , Woodson C. B. , , Koseff J. R. , , and Monismith S. G. , 2014: Stratified turbulence in the nearshore coastal ocean: Dynamics and evolution in the presence of internal bores. J. Geophys. Res. Oceans, 119, 8709–8730, doi:10.1002/2014JC010396.
Wiles, P. J., , Rippeth T. P. , , Simpson J. H. , , and Hendricks P. J. , 2006: A novel technique for measuring the rate of turbulent dissipation in the marine environment. Geophys. Res. Lett., 33, L21608, doi:10.1029/2006GL027050.
Wolk, F., , Yamazaki H. , , Seuront L. , , and Lueck R. G. , 2002: A new free-fall profiler for measuring biophysical microstructure. J. Atmos. Oceanic Technol., 19, 780–793, doi:10.1175/1520-0426(2002)019<0780:ANFFPF>2.0.CO;2.