1. Introduction
Stratocumulus clouds are ubiquitous over the globe—with year-round coverage of around 20%—and have a significant impact on Earth’s radiation budget (Hartmann et al. 1992; Eastman and Warren 2014). They are typically found on the cold eastern edges of the oceans in areas of large-scale subsidence characterized by strong lower-tropospheric stability (Klein and Hartmann 1993; Wood and Bretherton 2006).
The fractional coverage of those low-level clouds is controlled by the dynamics of the stratocumulus-topped boundary layer (STBL), which consists of a well-mixed layer of several hundreds of meters lying below a cloud deck, which is in turn capped by a thin stable inversion layer and by the free troposphere (e.g., Albrecht et al. 1995; Wood 2012). The dynamics of the STBL are challenging for two main reasons: 1) the concurrence of several thermodynamical and turbulent processes in action and 2) the relative thin region over which the most of these processes are occurring.
Indeed, a typical marine STBL shows an abrupt change of the moisture and temperature profiles within an inversion layer of a few tens of meters (Wood 2012). In this thin layer, convective instability, driven by cloud-top radiative cooling, controls the turbulent motions of the underlying mixed layer (Lilly 1968; Randall 1980; Deardorff 1981; Stevens et al. 1999). The entrainment of warm and dry tropospheric air into the STBL, favoring evaporative cooling and mixing, further contributes to local changes in buoyancy (Deardorff 1976; Stevens 2002; Mellado 2017).
Many observational studies have investigated the STBL properties, often focusing on entrainment (e.g., Wood and Field 2000; Gerber et al. 2005; Ghate et al. 2015). Large-eddy simulations (LESs) and direct numerical simulations (DNSs), even though with some caveats, have provided a detailed insight into the STBL dynamics (Moeng et al. 1996; Bechtold et al. 1996; Stevens et al. 2003b, 2005b; Mellado et al. 2009; Yamaguchi and Randall 2012; de Lozar and Mellado 2015).
The STBL is in the climate community spotlight also because stratocumulus clouds represent a large source of uncertainty in global climate model simulations (Bony and Dufresne 2005; Nam et al. 2012). Realistic simulation of low-level clouds is still problematic, in large part because these are the results of the interplay of the representation of many physical processes (Bechtold and Siebesma 1998; Dal Gesso et al. 2015; Bellon and Geoffroy 2016). This considerably affects both the simulation of present-day climate and the spread of future climate projections (Brient and Bony 2013; Tsushima et al. 2016).
Therefore, in order to provide a reasonable representation of the stratocumulus clouds dynamics, an accurate parameterization of the STBL is mandatory. And in order to do so, a comprehensive knowledge of the turbulent fluxes within the STBL must be achieved.
Several works have investigated the organized turbulent transport in the STBL with a special focus on downdrafts, updrafts, and entrainment (e.g., Schumann and Moeng 1991; Moeng and Schumann 1991; Krueger 1993; Kollias and Albrecht 2000). However, the definition of these convective structures is typically unclear or case specific and usually is based on vertical velocity sign or magnitude (Nicholls 1989; Schumann and Moeng 1991; Moeng et al. 1992). The analysis of the entrainment, even when it is done through a passive scalar emitted in the free troposphere (e.g., Kurowski et al. 2009; Pedersen et al. 2016), is usually not included in a comprehensive and complete analysis of the turbulent transport within the STBL. To this day, no systematic study has investigated updrafts, downdrafts, and entrainment in a unique framework and has evaluated each contribution to the overall turbulent transport of the STBL. Nonetheless, the identification of convective structures—including the role of entrainment—is of key importance to improve our knowledge and to correctly parameterize stratocumulus clouds.
Recently, Park et al. (2016) provided a new estimate of the turbulent transport for shallow convection, making use of the concept of coherent structures (Robinson 1991; Haller 2015). The definition of coherent structures can widely vary in literature: usually they are detected as the dominant larger-scale structures within the turbulent flow that are characterized by similar thermodynamical and/or scalar properties over a defined spatial or temporal extent (e.g., Khanna and Brasseur 1998; Haller and Yuan 2000; Farge et al. 2001; Schoppa and Hussain 2002; Kim and Park 2003; Li and Bou-Zeid 2011).
Our work aims to provide a more detailed look at the thermodynamical and transport properties of the STBL using high-resolution LES and coherent structures analysis. This is made in a standard nonprecipitating nocturnal marine stratocumulus case, the Second Dynamics and Chemistry of the Marine Stratocumulus field study Research Flight 01 (DYCOMS II RF01; Stevens et al. 2003a, 2005b). We here use the approach developed for shallow convection by Park et al. (2016), which identified coherent structures using two passive scalars and the vertical velocity field. However, considering the marked dynamical differences between shallow convection and the STBL, we adapt their method in order to focus on the most known convective structures of the STBL, that is, updrafts, downdrafts, and entrainment. Finally, we provide a measure of the turbulent fluxes of each coherent structure identified, evaluating their contribution to the STBL dynamics.
2. Data and methods
a. The model and the case study
We use the University of California, Los Angeles, large-eddy simulation model (UCLA-LES; Stevens et al. 1999, 2005b; Stevens and Seifert 2008). UCLA-LES solves the prognostic equations for the velocity field, liquid water potential temperature
The DYCOMS II RF01 case study is selected (Stevens et al. 2003a, 2005b): it represents a nonprecipitating nocturnal maritime boundary layer where the stratocumulus cloud layer is persistent throughout the night. The inversion layer is found at about 850 m, and it is characterized by a temperature jump of about 10 K.
In our simulations, UCLA-LES is set to consider only the reversible conversion between liquid water and water vapor, neglecting any form of precipitation. Surface fluxes are set according to the DYCOMS II RF01 protocol, with latent heat set to 115 W m−2 and sensible heat set to 15 W m−2, while the simplified radiative scheme from Stevens et al. (2005b) is used, providing a radiative cooling dependent on the liquid water mixing ratio of about 60 W m−2. Finally, geostrophic winds are set to Ug = 6.5 m s−1 and Vg = −5 m s−1.
b. Large-eddy simulations
LESs of STBL dynamics require extremely high horizontal and vertical resolution—on the order of 1 m isotropically (Matheou et al. 2016). The spatial dimension of the cloud holes (where entrainment occurs) can be as small as 5 m (Gerber et al. 2005), and the sharp inversion layer needs to be properly resolved in order to avoid an overestimation of the entrainment (Stevens et al. 2005b).
We tested the UCLA-LES model in eight different configurations, changing both the horizontal and vertical grids and the domain size. The simulation length was fixed to 4 h as in the DYCOMS II RF01 LES intercomparison project (Stevens et al. 2005b).
In general, good agreement was found with observations, even at the lowest resolution (80 m × 80 m × 5 m). However, improvements were observed following grid refinement, while the results are not sensitive to the domain size (see the appendix for details). Therefore the configuration used for the rest of the work is the one with the highest horizontal and vertical resolution. It has a domain size of about 5 km × 5 km, using a 10-m horizontal grid (512 × 512 grid points) with a nonregular vertical grid. The vertical grid spacing is refined (about 1 m) close to the surface, then it becomes coarser in the heart of the STBL (up to about 16 m), and it gets again finer at the top of the mixed layer, with a fixed value of 1 m throughout the inversion layer. The grid spacing increases again above the inversion (up to about 55 m) to reach the final height of about 1500 m with 258 levels. In the upper 10 layers (about 400 m) a sponge layer is present to avoid propagation of gravity waves. The grid spacing as a function of height, compared to the 5-m vertical grid used in other sensitivity simulations, is reported in Fig. 1a.

(a) UCLA-LES vertical grid spacing for the nonregular grid (circles) and the 5-m regular one (diamonds). For the nonregular grid, the resolution in the inversion layer is 1 m. Vertical profiles of (b)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

(a) UCLA-LES vertical grid spacing for the nonregular grid (circles) and the 5-m regular one (diamonds). For the nonregular grid, the resolution in the inversion layer is 1 m. Vertical profiles of (b)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
(a) UCLA-LES vertical grid spacing for the nonregular grid (circles) and the 5-m regular one (diamonds). For the nonregular grid, the resolution in the inversion layer is 1 m. Vertical profiles of (b)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
c. The scalars: 
and 


To detect the coherent structures in the STBL, two passive scalars are added to the simulations. A first scalar




The vertical profiles of the scalars at the beginning of the simulation and after 4 h are reported in Figs. 1b and 1c.
The scalars are used for the definition of the coherent structures, which is described in section 3. While
This has been done with a series of specific sensitivity experiments, aimed at investigating the coherent structures sensitivity to the relaxation times
Conversely, the definition of
3. Identification of the coherent structures
To identify the coherent structures, we make use of the octant analysis (Volino and Simon 1994; Park et al. 2016). Here a spatial field is divided into eight clusters—named octants—according to the signs of the anomalies of three variables. Octant analysis is an extension of better-known quadrant analysis (Raupach 1981; Sullivan et al. 1998), where only two fields are used. To present our methodology in a detailed way, we start introducing the quadrant analysis, which is based on the anomalies of w and
a. Quadrant analysis
Figure 2 shows a snapshot at the last time step of the simulation (after 4 h) of the horizontal cross section at 0.9zi (785 m), that is, already within the cloud layer. The detailed cloud structure can be seen in Fig. 2a, with circular clouds with a radius of about 1 km, surrounded by thin cracks where the liquid water content drops abruptly. The cloud pattern resembles the observed patchy stratocumulus cloud deck obtained from satellite imagery (Stevens et al. 2005a; Wood 2012).

Horizontal cross sections at 0.9zi for (a) liquid water mixing ratio, (b) vertical velocity, (c) quadrants, (d)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Horizontal cross sections at 0.9zi for (a) liquid water mixing ratio, (b) vertical velocity, (c) quadrants, (d)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Horizontal cross sections at 0.9zi for (a) liquid water mixing ratio, (b) vertical velocity, (c) quadrants, (d)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Strong updrafts are evident in the core of the clouds, with maximum velocity of about 3 m s−1 (Fig. 2b). The presence of updrafts is confirmed by the low values of
Entrainment is even more evident when looking at the vertical cross section at x = −5 m in Fig. 3. Here the cloud hole at about y = −1400 m is associated with a plume of

Vertical cross sections at X = −5 m for (a) liquid water mixing ratio, (b)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Vertical cross sections at X = −5 m for (a) liquid water mixing ratio, (b)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Vertical cross sections at X = −5 m for (a) liquid water mixing ratio, (b)
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
As mentioned above, in order to identify the coherent structures, we start introducing the quadrant analysis. We make use of the signs of the anomalies from the horizontal slab average of
The result of the quadrant analysis is shown in Fig. 2c and Fig. 3e. Air coming from below
In addition to these two “main” convective structures, air with the same
b. Octant analysis
Even if the quadrant analysis provides significant information on the convective structures, we would like to distinguish between the part of the downdraft air that is merely the recirculation within the STBL and the part that is coming from the free troposphere. To fully define the coherent structures, we thus generalize to octant analysis using a third variable (SFT). However, the quadrant-to-octant step is performed in an atypical way, avoiding the slab-average anomalies of
We therefore introduce a threshold
Combining the signs of
The eight octants defined according to the different anomalies of vertical velocity, scalar, and tracer.


The new clusters are found in the cloud region only: Octant 5 (light green) represents air coming from aloft that is descending (positive
Since we are not aiming to define coherent structures in the free troposphere, octants are defined only up to values of
c. The threshold definition
An important question is obviously how to objectively determine the above-defined threshold








(a) Cost function values as a function of threshold thr evaluated for the last time step of the simulation (at t = 4 h). Vertical profiles of turbulent heat flux for the (b) entrainment octant and (c) downdraft octant for a set of values of thr. The colors of the profiles correspond to the values of the points shown in (a). The dashed lines show the heat flux profiles for the maximum value of the cost function, that is, for thr0.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

(a) Cost function values as a function of threshold thr evaluated for the last time step of the simulation (at t = 4 h). Vertical profiles of turbulent heat flux for the (b) entrainment octant and (c) downdraft octant for a set of values of thr. The colors of the profiles correspond to the values of the points shown in (a). The dashed lines show the heat flux profiles for the maximum value of the cost function, that is, for thr0.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
(a) Cost function values as a function of threshold thr evaluated for the last time step of the simulation (at t = 4 h). Vertical profiles of turbulent heat flux for the (b) entrainment octant and (c) downdraft octant for a set of values of thr. The colors of the profiles correspond to the values of the points shown in (a). The dashed lines show the heat flux profiles for the maximum value of the cost function, that is, for thr0.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
4. Properties of the coherent structures
a. Main features
A more integrated analysis of the octants is provided by investigating the horizontal cross section at six different levels in Fig. 5. Here we see that Octants 4 (red) and 7 (dark blue) (i.e., updrafts and downdrafts) dominate the lower and middle parts of the STBL. Around those main structures, Octants 3 (orange) and 8 (light blue) represent what are defined as turbulent shells (ascending and subsiding, respectively). These octants track air with the same

Horizontal cross sections for octants at 0.05, 0.2, 0.5, 0.8, 0.95, and 1 × zi at t = 4 h.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Horizontal cross sections for octants at 0.05, 0.2, 0.5, 0.8, 0.95, and 1 × zi at t = 4 h.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Horizontal cross sections for octants at 0.05, 0.2, 0.5, 0.8, 0.95, and 1 × zi at t = 4 h.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
As mentioned above, in the upper layers entrainment (Octant 5; light green) becomes more frequent. Entrained air gets mixed by turbulence and “transformed” into standard downdraft air (Octant 7; dark blue) as it descends into the STBL: as the air descends it levels out its
At higher levels the less-frequent Octant 1 (pink) is identified: this has the same
Finally, the last two octants—Octant 2 (yellow) and Octant 6 (dark green)—are infrequent too, and they are mainly found in the inversion layer along the edges and the top of the updrafts (Fig. 5f). They detect regions where updraft air, mostly originating from lower levels
Further insight onto the properties of the different octants is provided by the

Scatterplot for total water mixing ratio
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Scatterplot for total water mixing ratio
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Scatterplot for total water mixing ratio
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Figure 6 shows also that not only the
b. Vertical profiles
At first glance, the presence of downdrafts and updrafts may suggest the presence of a symmetric circulation. In a broader sense, the STBL shares many common features with Rayleigh–Bénard convection: a warm surface below and a radiatively cooled surface above. However, as we will show, the free-tropospheric entrainment (due to the absence of a rigid lid at the top) and the phase change of water generate important differences in the vertical profiles of updrafts and downdrafts.
As previously noted in Fig. 2, updrafts and downdrafts dominate the octants’ frequency, as can be seen by the vertical profiles in Fig. 7a. Combined, they cover about 75% of the area in the most of the STBL. As expected, approaching the inversion layer, the entrainment octant replaces the downdraft octant, reaching values of about the 30% at

Vertical profiles averaged over the last hour of simulation according to each octant for (a) octant frequency, (b) total water mixing ratio
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Vertical profiles averaged over the last hour of simulation according to each octant for (a) octant frequency, (b) total water mixing ratio
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Vertical profiles averaged over the last hour of simulation according to each octant for (a) octant frequency, (b) total water mixing ratio
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Turbulent shells occupy most of the remaining horizontal area, with a higher frequency of occurrence at the surface and at the top, where the presence of the physical and thermodynamical lids favor the occurrence of a returning circulation: this can also be seen in the turbulent kinetic energy [TKE = (1/2)〈u′2 + υ′2 + w′2〉] profile of Fig. 7g, in which subsiding shells are characterized by large values of TKE. Turbulent shells show weaker vertical speeds (about 1/3 of their “main” octants; Fig. 7e).
The vertical profiles of liquid and total water mixing ratio and liquid water potential temperature, shown in Figs. 7b–d, confirm the results of Fig. 6. The updraft octant is composed of warm and moist air, downdrafts are cold and relatively dry, and entrainment is dry and warm. It is however interesting to point out that the liquid water content of the entrainment octant is not null, suggesting that our definition of entrainment is not bound to the presence of pure dry air, but it is tracking the motion of parcels of free-tropospheric air that can then mix within the cloud layer generating cloudy air. As a consequence, entrained air exhibits weak but nonzero radiative cooling (Fig. 7h).
As expected, buoyancy (Fig. 7f) is strongly affected by phase change of water: updrafts are characterized by positively buoyant air with large positive vertical velocity and they increase their buoyancy into the cloud layer owing to condensation of water vapor. Interestingly the properties of the downdrafts are almost symmetrical in vertical to the updrafts, with a large negative vertical velocity and a minimum in buoyancy magnitude in the middle of the STBL. They experience also a further decrease in buoyancy approaching the surface, owing to the local increase of environmental temperature—caused by surface fluxes.
Finally, it is interesting to note that Octants 2 and 6, which represent the turbulent mixing in the inversion layer, have large values of TKE (and strong negative speed for Octant 6). Moreover, when compared to entrainment (Octants 1 and 5), they also show stronger radiative cooling, colder temperatures, and considerably negative values of buoyancy. This further suggests that a large part of the mixing in the inversion layer is identified by Octants 2 and 6.
As the air descends into the column, it loses memory of its origin (i.e.,
c. Shape
The shape of the updrafts and downdrafts structures (Fig. 8) can be studied introducing the definition of “circularity” of each structure: this is the ratio c = 4π[Area/(Perimeter)2]. A circle will have c = 1 while an asymptotic stretched ellipse (i.e., a line) will have c = 0.

Circularity profiles for updraft (Octant 4; red), downdraft (Octant 7; solid blue), and full downdraft (Octant 7 + Octant 5; dotted blue), averaged during the last hour of simulation. Solid green line is zi.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Circularity profiles for updraft (Octant 4; red), downdraft (Octant 7; solid blue), and full downdraft (Octant 7 + Octant 5; dotted blue), averaged during the last hour of simulation. Solid green line is zi.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Circularity profiles for updraft (Octant 4; red), downdraft (Octant 7; solid blue), and full downdraft (Octant 7 + Octant 5; dotted blue), averaged during the last hour of simulation. Solid green line is zi.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
We identify individual updrafts and downdrafts (Octant 4 and Octant 7, respectively) at each level and then compute their circularity. To take into account the fact that entrainment and downdraft octants belong to the same vertical movement, circularity for the two octants jointly is also estimated (Octants 5 and 7). The average profile of circularity is then computed as the area-weighted circularity at each level. Only structures having a horizontal area at least of 0.05 km2 are considered.
Figure 8 shows that updrafts evolve from a stretched-streaks structure to round thermals as they move up into the STBL (as seen also in Fig. 5). Downdrafts behave similarly: they are relatively stretched aloft in the inversion layer and become more circular close to the surface. This is typical of convective instability that organizes in thermal sheets (Stull 1988). However, wind shear tends to increase this feature, especially close to the surface, as commonly seen in a boundary layer with shear (Park et al. 2016). When averaged throughout the STBL, downdrafts are more elongated than updrafts (c = 0.034 for entrainment/downdrafts and c = 0.047 for updrafts), which means that for the same area the perimeter of updraft structures is smaller by 20%.
d. Turbulent fluxes
We finally investigate the relative contribution of each coherent structure to the turbulent transport of mass, heat, and moisture (Fig. 9). Indeed, this is essential for the development of a physically based parameterization of any boundary layer in weather and climate models (e.g., Rio et al. 2010).

Vertical profiles averaged over the last hour of simulation according to each octant for (a) turbulent mass flux
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Vertical profiles averaged over the last hour of simulation according to each octant for (a) turbulent mass flux
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Vertical profiles averaged over the last hour of simulation according to each octant for (a) turbulent mass flux
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
The largest transport of mass is carried out by updrafts and downdrafts, while within the inversion layer the entrainment octant makes for a large part of transport. When considered together, entrainment and downdraft octants roughly match—with opposite signs—the vertically integrated mass transport of updrafts (about 205 kg m−1 s−1). Turbulent shells (both subsiding and ascending) have a smaller but not negligible contribution to mass transport that integrated over the whole STBL is about 10%–15% of the share of the updraft octant.
In terms of heat transport, as expected by the thr0 definition, downdraft and entrainment have opposite contributions to the turbulent heat flux. The global contribution of the three main octants (updraft, downdraft, and entrainment) to the overall turbulent heat flux profile is complex (Fig. 9b). Updrafts dominate the positive transport in the lower part of the column and downdrafts in the higher levels. However, the negative heat flux carried by entrainment is the largest term of the decomposition, especially in the cloud region. It is interesting to note that the updrafts contribution to the heat flux transport becomes negative approaching the inversion owing to higher environmental temperature aloft. In this region—owing to the large gradient of temperature—also secondary octants acquire nonnegligible relevance.
Moisture transport is simpler, with positive values associated with the mixing of both surface moisture and dry entrained air into the STBL. In our experiment, the contribution of the updrafts is about twice that of downdrafts/entrainment with the exception of the upper part of the STBL, where entrainment becomes more important. Integrated over the whole column, about the 65% of the moisture transport is associated with updraft octant, and only 20% (25%) to downdraft (entrainment) octant.
The turbulent shells found in the STBL deserve a final comment: they are clearly different from those observable in shallow or deep convection (Heus and Jonker 2008; Glenn and Krueger 2014). As shown in Fig. 9, their contribution to the mass flux is minor, whereas their overall heat and moisture fluxes are negligible. This confirms the idea that they represent mostly turbulent mixing occurring along the edges of updrafts and downdrafts. While in the shallow convection we have sparse convection surrounded by large portions of stagnant and slightly subsiding air, in the STBL turbulence is present everywhere, and it is characterized by updrafts and downdrafts strongly interacting with each other; it is not unusual to see updrafts and downdrafts that collide in the middle of the STBL.
5. Conclusions
In the present work we have investigated the properties of coherent structures in a nonprecipitating nocturnal marine stratocumulus-topped boundary layer. This has been done with a series of high-resolution large-eddy simulations performed with UCLA-LES in the DYCOMS II RF01 case study. We have introduced a novel method of analysis based on two different passive scalars and the octant analysis, allowing a qualitative and quantitative analysis of coherent structures in the STBL.
The method is weakly sensitive to the relaxation times of
The resulting octant analysis identifies eight different coherent structures that are described in terms of their thermodynamical properties: this is summarized by the schematic diagram presented in Fig. 10. The surface fluxes generate elongated and irregular “streak” updrafts (Octant 4; red), made by warm, moist, and positively buoyant parcels that acquire strong positive vertical velocity and rapidly reach the lifting condensation level, acquiring further buoyancy and here generating the stratocumulus cloud deck. As the updrafts ascend, they partially mix with the rest of STBL (along their turbulent subsiding shells marked in light blue). When updrafts reach the inversion layer they begin to lose buoyancy, penetrating irregularly in the free troposphere and forming cloud domes rather than a flat surface. The overshooting air turbulently mixes with free-tropospheric air along the cloud edges (dark green and yellow in Fig. 10) and generates gravity waves that propagate in the nonturbulent free troposphere.

Schematic diagram representing the STBL turbulent coherent structures identified with the octant analysis. Each color is representative of each octant.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Schematic diagram representing the STBL turbulent coherent structures identified with the octant analysis. Each color is representative of each octant.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Schematic diagram representing the STBL turbulent coherent structures identified with the octant analysis. Each color is representative of each octant.
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
At this stage, the inversion deflects horizontally the air masses—creating a horizontal pressure gradient that favors entrainment—and, following continuity, forces them back to the STBL. In the meantime the cooling, both evaporative and radiative, acts on the newly mixed air reducing its buoyancy. Such a mixed air mass starts its descent as entrainment, penetrating along cloud edges and elongated cloud holes (Octant 5; light green), whereas air that has never left the STBL is identified as a standard downdraft (Octant 7; dark blue). Turbulent shells develop on both sides of these coherent structures (pink and orange, respectively). As it descends, entrainment air is further mixed with STBL air and finally disappears, transferring its negative speed and buoyancy to downdrafts. Finally, this air hits the surface and, by continuity, gives rise to new updrafts.
Given the high degree of turbulence and the complex three-dimensional nature of the flow, the real circulation is obviously more complex that the one depicted above: the schematic in Fig. 10 provides a distinction among the different coherent structures.
The method presented here allows a detailed quantification of the turbulent fluxes associated to each structure and can be easily exported to all the STBL configurations. In this direction, we ran a simulation with 20 m × 20 m × 5 m resolution and 256 × 256 grid points of the DYCOMS II RF02 case study following the setup of Ackerman et al. (2009). Even though the results are considerably different owing to the different setups between the two experiments—RF02 includes drizzle, a weaker inversion, a larger liquid water path, etc.—the combination of relaxed scalars, threshold detection, and octants is robust. It correctly identifies updrafts, downdrafts, entrainment, and their turbulent shells (not shown).
Most importantly, this work highlights a nonnegligible contribution of the downdrafts to mass, heat, and moisture fluxes in the STBL, pointing to a potential weakness of most of the present-day parameterizations of stratocumulus convection in weather and climate models. Most of them include an eddy diffusion scheme (e.g., Lock et al. 2000) usually in combination with a nonlocal mass flux component to characterize an ensemble of updrafts [known as eddy diffusivity–mass flux approach (EDMF); Köhler et al. 2011]. Those EDMF schemes—although they can represent some STBLs in a satisfactory way (Sušelj et al. 2013)—are based on the assumption that only a small areal fraction is covered by updrafts. Also, they do not include an explicit representation of boundary layer entrainment. From a physical point of view these assumptions are not valid, and they lead to unrealistic response to changes in radiative and surface forcing (Dal Gesso et al. 2015). As shown by Fig. 9, the contribution to turbulent transport of downdrafts is important and should be accounted for in order to reproduce correctly the STBL dynamics. Such contribution becomes striking when looking at turbulent heat flux and its subdivision into a STBL component and an entrained one.
The relative contributions of the coherent structures—especially to heat and moisture turbulent fluxes—are likely dependent on external forcing (as the strength of the radiative cooling or the intensity of the surface fluxes) and on the mean state (as temperature and moisture profiles). As can be easily imagined, two different structures can be affected in different ways by different forcing.
This analysis paves the way to further studies: quantifying the different contributions of each coherent structure as a function of several external forcing, such as the radiative cooling, the wind shear, the vertical stability, and the surface fluxes. With the adoption of coherent structures analysis, we can provide a robust way to estimate the turbulent fluxes sensitivity in order to inform parameterization development—as has been done in shallow convection (Rio et al. 2010)—accounting for each different contribution, especially the ones from updrafts, downdrafts, and entrainment.
Acknowledgments
PD and FD gratefully acknowledge the funding from the European Union’s Horizon 2020 research and innovation program COGNAC under the European Union Marie Skłodowska-Curie Grant Agreement 654942. PG acknowledges the funding from the National Science Foundation EAR 1552304 CAREER grant and NASA New Investigator Program (NIP) NNX14AI36G.
APPENDIX
Sensitivity Experiments
a. Resolution and domain size
STBL simulation by LES is known to be affected by domain size and horizontal and vertical resolution (e.g., Pedersen et al. 2016). We explored this sensitivity with eight DYCOMS II RF01 simulations (4 h long) for which 3D data have been stored only for the last hour of simulation (sampling it every 120 s).
Keeping constant the domain size, 80-, 40-, 20-, and 10-m horizontal grids have been tested. For the two finer grids, both a 5-m regular vertical grid and a nonuniform vertical grid (with 1-m resolution in the inversion layer) have been used. The vertical grid spacing of the two grids is shown in Fig. 1a. All the above-mentioned simulations have a fixed domain size of 2.56 km × 2.56 km: in order to test possible sensitivity to the domain size, an 80 m × 80 m × 5 m simulation over a ~41 km × 41 km domain was also run.
A comparison with the observations (Stevens et al. 2005b) shows that even at lower resolution the model performances are fairly good (Fig. A1). Vertical profiles of total water mixing ratio and liquid potential temperature are in agreement with original data. Finer grids, both vertical and horizontal, increase the liquid water content and the radiative cooling at the top of the cloud. As a consequence, at higher resolution the STBL is colder than for a coarser grid. Finer grids also reduce the UCLA-LES bias in vertical velocity variance and skewness. Finally, by comparing the two experiments at 80 m × 80 m × 5 m grid, one with small and the other with large domain, it is possible to see that domain size is not affecting the statistics of any variable, similarly to what was reported by Pedersen et al. (2016).

Vertical profiles averaged over the last hour of simulation for the sensitivity experiments to horizontal and vertical resolution. The different grids used are marked in the legends. Dashed lines show the cloud base and the cloud top. Dots show the observational values retrieved from Stevens et al. (2005b).
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Vertical profiles averaged over the last hour of simulation for the sensitivity experiments to horizontal and vertical resolution. The different grids used are marked in the legends. Dashed lines show the cloud base and the cloud top. Dots show the observational values retrieved from Stevens et al. (2005b).
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Vertical profiles averaged over the last hour of simulation for the sensitivity experiments to horizontal and vertical resolution. The different grids used are marked in the legends. Dashed lines show the cloud base and the cloud top. Dots show the observational values retrieved from Stevens et al. (2005b).
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Figure A2 shows the time evolution of entrainment velocity (evaluated as

Time evolution of (a) liquid water path, (b) turbulent kinetic energy, (c) cloud fraction, (d) maximum vertical velocity, (e) entrainment velocity (1-min running mean), and (f) cloud-base, cloud-top, and inversion heights for the sensitivity experiments to horizontal and vertical resolution. Dots show the observational values retrieved from Stevens et al. (2005b).
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Time evolution of (a) liquid water path, (b) turbulent kinetic energy, (c) cloud fraction, (d) maximum vertical velocity, (e) entrainment velocity (1-min running mean), and (f) cloud-base, cloud-top, and inversion heights for the sensitivity experiments to horizontal and vertical resolution. Dots show the observational values retrieved from Stevens et al. (2005b).
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Time evolution of (a) liquid water path, (b) turbulent kinetic energy, (c) cloud fraction, (d) maximum vertical velocity, (e) entrainment velocity (1-min running mean), and (f) cloud-base, cloud-top, and inversion heights for the sensitivity experiments to horizontal and vertical resolution. Dots show the observational values retrieved from Stevens et al. (2005b).
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Finally, it is interesting to study the sensitivity of the octant analysis to the different resolutions. This is done in Figs. A3a and A3b, where the variability of the octant frequencies and of the turbulent fluxes is shown (averaged over the STBL and over the last hour of simulation). These quantities are weakly sensitive to resolution: in general, finer grids lead to a larger mass transport by updrafts and downdrafts. Conversely, they reduce the amount of entrainment octant. Finally, while moisture fluxes seems to be insensitive to the different grids, Fig A3b shows that turbulent heat fluxes are sensitive to it. The most evident variability is seen for the updrafts, which moves from a negative averaged transport for coarse resolution to a positive one: this is actually driven by the change in the environmental temperature in the STBL. Low-resolution simulations are warmer (owing to the reduced radiative cooling) and therefore the heat flux contribution by updrafts tends to be negative.

Scatterplots representing the sensitivity to resolution and domain size of the STBL vertically averaged (a) octant frequencies vs octant turbulent mass flux
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1

Scatterplots representing the sensitivity to resolution and domain size of the STBL vertically averaged (a) octant frequencies vs octant turbulent mass flux
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
Scatterplots representing the sensitivity to resolution and domain size of the STBL vertically averaged (a) octant frequencies vs octant turbulent mass flux
Citation: Journal of the Atmospheric Sciences 74, 12; 10.1175/JAS-D-17-0050.1
More generally, the lack of convergence of several variables suggests that LES of the DYCOMS II RF01 case would likely benefit of a further increase of resolution, especially in its horizontal component. A uniform grid with less of 2.5-m resolution seems to be necessary to achieve convergence for the main thermodynamical fields (Matheou et al. 2016). However, a 1-m grid—without changing the number of grid points—would lead to an undesirably small domain of 512 m × 512 m (a factor of 100 in terms of area). Given that in the present work we aim to characterize the statistical properties of the coherent structures within STBL, such a reduced-size domain would likely invalidate our analysis (Sullivan and Patton 2011). The 10 m × 10 m simulation represents thus the most reasonable trade-off between domain size and grid refinement, keeping constant the available computing time.
b. 
relaxation time

The sensitivity analysis of the octant frequencies to the



Seven different relaxation times have tested, ranging from τ/2 to 8τ (i.e., from 400 to 6400 s). Analogous to what was done for resolution, Figs. A3c and A3d show the sensitivity of the different octants-averaged STBL-averaged quantities. As expected, a fast relaxation time reduces the frequency and the mass flux for the entrainment octant, whereas a slow relaxation time increases it. However, for large enough decay times
Therefore
c. 
relaxation time

With a similar setup as the one for the
It is important to highlight that, owing to the turbulent nature of the flow within the STBL, it is actually impossible to uniquely define when a particle stops to be part of the ascending (subsiding) shell and starts to be part of the updraft (downdraft) structures. This is because mixing and thermodynamical process operates continuously and most thresholds are arbitrary. An extremely short
It is thus important to assess the properties of the eddies within the STBL to correctly set
From a physical point of view, this implies that a very short
Therefore, τBL = 400 s is chosen as it is representative of the time scale of the smallest eddies resolved by the model. Indeed, such a value is a good trade-off between the capacity of describing the small-scale turbulence in our LES and the possibility of identifying the larger-scale nonlocal transport in the STBL.
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