1. Introduction
Cloud-system-resolving model (CSRM) simulations subject to horizontally or zonally homogeneous boundary and forcing conditions can spontaneously develop large-scale circulations in the homogeneous direction. One example is the convectively coupled waves, which can develop without feedbacks from radiation or surface fluxes (e.g., Grabowski and Moncrieff 2001; Tulich et al. 2007; Kuang 2008a; Nasuno et al. 2008; Blanco et al. 2016), and appear comparable in structure and propagation characteristics to such waves observed in nature (e.g., Chang 1970; Hendon and Liebmann 1991; Takayabu and Nitta 1993; Takayabu 1994; Wheeler and Kiladis 1999; Wheeler et al. 2000; Straub and Kiladis 2002; Haertel and Kiladis 2004). Readers are referred to Kiladis et al. (2009) for a review and a historical account of the observational studies. With additional feedbacks, particularly the radiative feedback, another type of spontaneous development of large-scale circulations appears possible, and the resulting slow-moving or stationary disturbances do not align with the dispersion curves of gravity waves or equatorial waves. This process in closed or periodic numerical domains is known as convective self-aggregation (e.g., Bretherton et al. 2005; Muller and Held 2012; Wing and Emanuel 2014; Holloway and Woolnough 2016; Wing and Cronin 2016; Holloway 2017; Wing et al. 2017). Readers are referred to Mapes (2016) and Wing et al. (2017) for recent reviews. Its connection to the observed Madden–Julian oscillation (MJO) has been suggested (Arnold and Randall 2015; Holloway et al. 2017).
A number of simple models have been proposed for the convectively coupled waves (e.g., Lindzen 1974; Emanuel 1987; Neelin et al. 1987; Wang 1988; Mapes 2000; Khouider and Majda 2006; Fuchs and Raymond 2007; Kuang 2008b, hereafter K08) and convective self-aggregation (Bretherton et al. 2005; Emanuel et al. 2014). These simple models were constructed to facilitate understanding, not for quantitative accuracy, and have provided valuable insights into the potential mechanisms of these phenomena. However, treatment of convection in these models largely relied on the physical intuitions of their creators instead of systematic simplifications or approximations of more complete models.
In this study, I shall consider a CSRM to provide an adequate, or at least relevant, representation of moist convecting atmospheres. For the convectively coupled waves, the resemblance between simulated and observed wave structures and dispersion relationships bolsters confidence in such an assumption. For the convective self-aggregation problem, where the dependence on numerical resolution and model configurations is stronger (e.g., Muller and Held 2012), confidence in this assumption is lower. Still, there is value in understanding such behaviors of the CSRM, notwithstanding the potential biases.
For understanding the linear stability of moist convecting atmospheres (as represented by the CSRMs) or their responses to weak forcing, linear response functions constructed from horizontally cyclic limited-domain CSRMs usefully encapsulate the macroscopic behavior of moist convection. When coupled with linearized large-scale dynamics, this approach can provide the needed linear models for such problems. This was used to study the convectively coupled waves (Kuang 2010) and weakly forced mock Walker cells (Kuang 2012). The latter study also noted the need to match the form of convection in the cyclic limited-domain CSRM (e.g., the extent of its organization) with the form of convection in the large-scale moist convecting atmospheres that one seeks to understand.
Models based on the linear response functions, however, are of too-high dimensions to analyze like the simple models referred to earlier. The purpose of this study is to bridge this gap, by developing simple models and constraining their parameters more systematically from the linear-response-functions-based models, with the simplifications and idealizations taken made clearer. This will place the simple models, and the insights derived from them, on a firmer footing.
This paper is Part I of a two-part study, presenting this procedure and its application to convectively coupled waves. The application to convective self-aggregation is described in Part II.
The rest of the paper is organized as follows. Section 2 describes the CSRM, the simulation setups, and the procedure used to construct the linear response functions. Section 3 presents the linear stability results from the linear-response-functions-based models. Section 4 presents the results from a model order-reduction procedure that reduces the problem into a set of six coupled ordinary differential equations (ODEs). In section 5, I split the system into a fast and a slow manifold and show that the slow manifold is essential for modes that resemble convective self-aggregation but not for the convectively coupled waves. Section 6 describes further simplifications that transform the fast manifold dynamics to a form similar to that of previous simple models of convectively coupled waves and discusses the implications to convectively coupled wave dynamics. The model is then applied to understand the difference in the stability of convectively coupled waves between the two mean states presented in Kuang (2010). Concluding remarks are presented in section 7.
2. Construction of the linear response functions from CSRMs
a. Description of the CSRM and simulation setups
All CSRM experiments were performed with the System for Atmospheric Modeling (SAM), version 6.7.5. A description of an earlier version of this model is given in Khairoutdinov and Randall (2003). The model solves the anelastic equations of motion. The prognostic thermodynamic variables are the liquid water static energy, total nonprecipitating water, and total precipitating water. I use a bulk microphysics scheme and a simple Smagorinsky-type scheme to parameterize the effect of subgrid-scale turbulence. Surface latent and sensible heat fluxes are computed using a bulk aerodynamic formula with a constant 10-m exchange coefficient of 1 × 10−3 and a constant surface wind speed of 5 m s−1 to eliminate wind-induced surface heat exchange, the effects of which will be explored in the future. Therefore, for convective self-aggregation, I will be focusing on the problem of linear radiative–convective instability, as emphasized in, for example, Emanuel et al. (2014). Surface momentum fluxes are computed with the Monin–Obukhov similarity theory. Radiation is computed using the National Center for Atmospheric Research Community Atmosphere Model (CAM) radiation package (Collins et al. 2006). Shorter integrations using RRTM radiation (Iacono et al. 2008) gave similar results. For simplicity, I have removed the diurnal cycle by setting the solar zenith angle constant at 51.7° and the solar constant at 685 W m−2.
All experiments are over an ocean surface with fixed temperature and doubly periodic lateral boundary conditions. The domain size is 128 km × 128 km in the horizontal with a 4-km horizontal resolution. There are 28 vertical layers that extend from the surface to 32 km, the top third of the domain being a wave-absorbing layer, similar to that used in the superparameterized CAM (SPCAM), which have been shown to produce convectively coupled waves, convective self-aggregation, and the MJO (e.g., Khairoutdinov et al. 2008; Arnold and Randall 2015). The relatively coarse horizontal and vertical resolutions were chosen both to reduce the cost associated with the calculations of the linear response functions and to make the results directly applicable to the interpretation of SPCAM results in the future.
b. Reference mean states
Two mean states are used in this paper (Part I), and more cases will be discussed in Part II.
The first mean state is that of a radiative–convective equilibrium (RCE) with zero horizontal-mean vertical velocity over the CSRM domain. The sea surface temperature (SST) is set to 30°C to facilitate direct comparisons with Emanuel et al. (2014). Fully interactive radiative feedback is included in this case.
In the other reference state, the domain-mean vertical velocity profile is set to be the mean vertical velocity profile over the large-scale array during the intensive operating period of the Tropical Ocean and Global Atmosphere Coupled Ocean–Atmosphere Response Experiment (TOGA COARE; Webster and Lukas 1992), as shown in Fig. 1 of Kuang (2008a). The SST is 29.5°C. Based on results for RCE over a range of SSTs (not shown), the SST difference between the RCE and TOGA cases is inconsequential for their linear stability differences discussed in this paper. Radiative cooling is prescribed to be the long-term averages of a control run with interactive radiation. This case will be referred to as the TOGA case. The main purpose of the TOGA case is to elucidate the dependence of convectively coupled waves on the mean state.
c. Construction of the linear response functions
The construction of the linear response functions from cyclic limited-domain CSRMs follows Kuang (2010, 2012) and is briefly described below.
Define the departures of horizontally averaged profiles of temperature T and moisture q of the limited-domain CSRM from a given reference state to constitute the mean-field state vector, denoted as x. If I assume the small-scale convective motions to be in statistical equilibrium with the (mean field) state vector, the expected values of the horizontally averaged convective tendencies









For the RCE case, I further record the anomalous radiative heating for each of the experiments, which form the columns of matrix
Linear response functions without radiative contributions are computed by subtracting
I have also computed the linear response functions due to the clear-sky radiative effects only or due to cloud radiative effects only. To do so, I first compute the clear-sky radiative heating for the RCE mean state. I then perturb the temperature and humidity in each of the model layers, one variable and one layer at a time, and recompute the clear-sky radiative heating. The difference between the resulting clear-sky radiative heating and that of the RCE mean state gives the clear-sky radiative effect of the temperature and moisture perturbations
The linear response functions here are constructed from limited-domain CSRM simulations that contain mostly unorganized convection. This is deemed suitable for the initial growth stage of linearly unstable modes. In contrast, for the steady-state problem of weakly forced mock Walker cells of Kuang (2012), propagating convectively coupled waves organized convection into strong squall lines, and this difference in the form of convection led to different linear responses that were found to be important in that problem.
Figure 1 shows the linear response functions for the RCE case, with the radiative contributions removed, and Fig. 2 shows the all-sky and clear-sky radiative responses

The four quadrants of the 2-h-average linear response function for the RCE case. The horizontal axis is the pressure of the perturbed layer, and the vertical axis is the pressure of the responding layer. Each column of the matrices is normalized by the mass of the perturbed layer.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

The four quadrants of the 2-h-average linear response function for the RCE case. The horizontal axis is the pressure of the perturbed layer, and the vertical axis is the pressure of the responding layer. Each column of the matrices is normalized by the mass of the perturbed layer.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
The four quadrants of the 2-h-average linear response function for the RCE case. The horizontal axis is the pressure of the perturbed layer, and the vertical axis is the pressure of the responding layer. Each column of the matrices is normalized by the mass of the perturbed layer.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(a),(c) All-sky and (b),(d) clear-sky radiative responses (2-h averages) to perturbations to the (a),(b) temperature and (c),(d) relative humidity fields. Axes and normalization follow that of Fig. 1.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(a),(c) All-sky and (b),(d) clear-sky radiative responses (2-h averages) to perturbations to the (a),(b) temperature and (c),(d) relative humidity fields. Axes and normalization follow that of Fig. 1.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
(a),(c) All-sky and (b),(d) clear-sky radiative responses (2-h averages) to perturbations to the (a),(b) temperature and (c),(d) relative humidity fields. Axes and normalization follow that of Fig. 1.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
General features of the linear response functions were discussed in more detail in Kuang (2012). Briefly, a warm or moist anomaly in the subcloud layer (below ~900 hPa) leads to cooling and drying locally and warming above; a warm anomaly in the free troposphere leads to cooling at and above the perturbed layer, while a moist anomaly in the free troposphere leads to warming at and above the perturbed layer.
Clear-sky radiative responses to temperature perturbations resemble Newtonian cooling (negative on the diagonal). Clear-sky radiative response to moisture perturbation shows the expected behavior that a reduction in relative humidity of a layer reduces radiative cooling in this layer while enhancing radiative cooling in the layers below, similar to that shown in Fig. 4 of Emanuel et al. (2014). The 2-h-averaged radiative heating anomalies shown in Fig. 2 include contributions from temperature and moisture anomalies produced over the 2-h period in response to the initial perturbations. This is particularly evident in the upper-tropospheric responses to boundary layer perturbations.
Cloud radiative response, taken as
The linear response functions for the TOGA case are presented in Fig. 3. There are no radiative contributions. Note the scale difference between Figs. 1 and 3. This was done because the mean rainfall in the TOGA case (8.9 mm day−1) is about 2.5 times that in the RCE case (3.6 mm day−1). See Fig. 2 of Kuang (2010) for a comparison of the vertical structures of mean convective heating, as well as the moister mean relative humidity profile of the TOGA case.

As in Fig. 1, but for the TOGA case with the color scales 2.5 times larger.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

As in Fig. 1, but for the TOGA case with the color scales 2.5 times larger.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
As in Fig. 1, but for the TOGA case with the color scales 2.5 times larger.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
A comparison of Figs. 1 and 3 shows that responses to lower-tropospheric temperature anomalies tend to have a stronger upper-troposphere extension in the RCE case compared to the TOGA case. There is also a hint of a stronger heating response and a weaker moisture response to midtroposphere moisture perturbations in the TOGA case (after adjusting for the factor-of-2.5 difference in mean convective heating). Note however that the fast-decaying eigenvectors tend to dominate these figures and mask the more slowly decaying modes, which can be more important for coupling with large-scale dynamics. The model order-reduction procedure described later will allow a more informative comparison between the two in the context of a simple model.
3. Linear stability results based on the linear response functions
We shall now consider the linear stability problem when moist convection is coupled to 2D linear gravity waves. This prototype problem captures the basic aspects of the coupling between convection and large-scale dynamics, upon which effects such as those from an equatorial β plane can be added (e.g., Andersen and Kuang 2008).






For simplicity, I neglect the virtual effect in the large-scale wave dynamics, which was found to have only a minor contribution, and assume a rigid lid (w = 0) at 175 hPa, as a radiating upper boundary condition is not essential for the instabilities that I shall consider.
The growth rates and phase speeds of the unstable modes for the RCE case with a Rayleigh damping time of 1 day are shown in the top panels of Fig. 4. With full radiative feedback, there are two branches of unstable modes: a propagating convectively coupled wave branch with wavelengths of thousands of kilometers and speeds near 20 m s−1 (only the positive phase speeds are shown) and a stationary branch, possibly identified as convective self-aggregation, with growth rates peaking at a wavelength of ~15 000 km. Representative structures of the unstable convectively coupled wave mode and the stationary mode are shown in Figs. 5 and 6.

(right) Linear growth rates and (left) the phase speed of the unstable modes for the RCE case for (top) the full model and (bottom) the reduced sixth-order model. The different choices for radiative feedbacks are represented by different colors: full all-sky radiative feedback (black), no radiative feedback (red), clear-sky radiative feedback only (blue), and cloud radiative feedback only (green).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(right) Linear growth rates and (left) the phase speed of the unstable modes for the RCE case for (top) the full model and (bottom) the reduced sixth-order model. The different choices for radiative feedbacks are represented by different colors: full all-sky radiative feedback (black), no radiative feedback (red), clear-sky radiative feedback only (blue), and cloud radiative feedback only (green).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
(right) Linear growth rates and (left) the phase speed of the unstable modes for the RCE case for (top) the full model and (bottom) the reduced sixth-order model. The different choices for radiative feedbacks are represented by different colors: full all-sky radiative feedback (black), no radiative feedback (red), clear-sky radiative feedback only (blue), and cloud radiative feedback only (green).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(top) Temperature, (middle) specific humidity, and (bottom) pressure velocity structures of the unstable propagating mode in Fig. 4 with full radiation and a wavelength of 2500 km with (left) the full model and (right) the reduced sixth-order model.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(top) Temperature, (middle) specific humidity, and (bottom) pressure velocity structures of the unstable propagating mode in Fig. 4 with full radiation and a wavelength of 2500 km with (left) the full model and (right) the reduced sixth-order model.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
(top) Temperature, (middle) specific humidity, and (bottom) pressure velocity structures of the unstable propagating mode in Fig. 4 with full radiation and a wavelength of 2500 km with (left) the full model and (right) the reduced sixth-order model.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(left) Temperature, (middle) specific humidity, and (right) pressure velocity structures of the unstable stationary mode in Fig. 4 with full radiation and a wavelength of 15 000 km with the full model (solid) and with the reduced sixth-order model (dashed).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(left) Temperature, (middle) specific humidity, and (right) pressure velocity structures of the unstable stationary mode in Fig. 4 with full radiation and a wavelength of 15 000 km with the full model (solid) and with the reduced sixth-order model (dashed).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
(left) Temperature, (middle) specific humidity, and (right) pressure velocity structures of the unstable stationary mode in Fig. 4 with full radiation and a wavelength of 15 000 km with the full model (solid) and with the reduced sixth-order model (dashed).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
One should not extrapolate the growth rates for the convectively coupled waves to higher horizontal wavenumbers to infer ultraviolet catastrophe (unbound growth rates as horizontal wavenumber increases). First, the scale separation between convection and the large-scale flow inherent in the framework adopted here will not apply when the horizontal wavelength becomes shorter than a few hundred kilometers. Moreover, the linear response functions, and thus the growth-rate calculations, assume that convection is always in statistical equilibrium with the large-scale flow. When the finite time that convection takes to respond to the large-scale flow is taken into account, growth rates for the convectively coupled wave branch at high wavenumbers are preferentially reduced (e.g., Emanuel et al. 1994).
The stationary mode decays without radiative feedbacks, while clear-sky and cloud radiative effects appear to destabilize the stationary modes roughly equally for this reference state. The convectively coupled waves are less affected by the different choices of radiative feedbacks.
The growth rates and the phase speeds of the unstable modes for the TOGA case are shown in Fig. 7. The strength of Rayleigh damping is reduced to 0.1 day−1 so that convectively coupled waves can be unstable for this case. When the same (0.1 day−1) Rayleigh damping is used in the RCE case, growth rates for convectively coupled waves are much greater, while the maximum growth rates for the stationary mode were little changed except with the peak shifting to lower wavenumbers (not shown). That the TOGA case has weaker convectively coupled wave instability was noted in Kuang (2010), and a more concrete discussion of the difference between the two is presented in section 6.

(right) Linear growth rates and (left) the phase speed of the unstable modes for the TOGA case when the full model is used (black) and when the reduced sixth-order model is used (blue). There is no radiative feedback.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(right) Linear growth rates and (left) the phase speed of the unstable modes for the TOGA case when the full model is used (black) and when the reduced sixth-order model is used (blue). There is no radiative feedback.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
(right) Linear growth rates and (left) the phase speed of the unstable modes for the TOGA case when the full model is used (black) and when the reduced sixth-order model is used (blue). There is no radiative feedback.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
I used Rayleigh damping in this study because of its simplicity so I can focus on the thermodynamic aspects. Preliminary results using CSRM-derived linear response function for horizontal momentum, as done in Kuang (2012), show that there are also an unstable convectively coupled wave branch and an unstable stationary mode branch. Analyses of such models are more complicated and are left to future work.
4. Model order reduction
I now reduce the dimension or order of the model described in section 3 so that its dynamics can be understood more easily. Starting with Eq. (2), I first reduce the order of vertical velocity. To do so, I consider x as the input, dx/dt as the output, and w as the internal state variable. This puts Eq. (2) in a form commonly used in control theory for linear, time-invariant systems, and stable algorithms exist to optimally reduce the order. I used the algorithm of Safonov and Chiang (1989). The order-reduction procedure linearly transforms then truncates the internal-state space to retain states with the highest Hankel singular values, such that for a given order that is retained, the error bound provided by Glover (1984) on the outputs for arbitrary inputs at all frequencies is minimized. The order reduction is independent of the horizontal wavenumber k, as multiplicative factors of
After reducing the order of vertical velocity, I have a system similar to Eq. (2) except with two modes for the vertical velocity. I then consider the two vertical velocity modes as the input, and their time derivative as the output, and x (profiles of temperature and humidity) as the internal state variables. Purely from the perspective of reproducing the full system’s behavior with a model of the lowest order, it is optimal to reduce temperature and humidity at all heights together. However, each of the resulting modes from such a procedure will involve temperature and humidity at all heights. For better interpretability, I shall perform a modular model reduction with structural constraints so that order reductions are done within predetermined subspaces. Specifically, based on our physical understanding (or preconception) of the system and the structures of the unstable modes of the full model shown in Figs. 5 and 6, I define three separate subspaces: the first consists of temperature and moisture in the boundary layer (set to be below 800 hPa), and the other two are the free-troposphere temperature and moisture fields above the boundary layer, respectively. State transformation is allowed only within each subspace but not across them. This is accomplished by zeroing out the cross-subspace terms in the observability and controllability Gramians in the order-reduction procedure (Keil and Gouze 2003). Again, the order reduction is independent of the horizontal wavenumber k.
In the spirit of a minimal complexity model, I set the number of thermodynamic modes retained to 4, the lowest order to reproduce the qualitative behavior of the full model. In all cases that I have examined, the four thermodynamic modes retained include two free-troposphere temperature modes, one free-troposphere moisture mode, and one boundary layer mode (examples of their vertical structures are shown later in Fig. 8). This partition is not imposed a priori and is the result of the order reduction; the structural constraint itself does not specify the number of modes retained in each of the three subspaces, which is free to vary between 0 and 4.

Basis functions used in the reduced sixth-order model for T1, T2, q, hb, w1, and w2 (see legends) in terms of the (left) temperature, (middle) specific humidity, and (right) negative pressure velocity.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

Basis functions used in the reduced sixth-order model for T1, T2, q, hb, w1, and w2 (see legends) in terms of the (left) temperature, (middle) specific humidity, and (right) negative pressure velocity.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
Basis functions used in the reduced sixth-order model for T1, T2, q, hb, w1, and w2 (see legends) in terms of the (left) temperature, (middle) specific humidity, and (right) negative pressure velocity.
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
Together with the two vertical velocity modes retained, I arrive at a sixth-order model. Growth rates and phase speeds of this reduced model for cases without radiation, with clear-sky radiation only, with cloud radiation only, and with full radiation are shown in the bottom panels of Fig. 4. Order reduction was done for the different radiation cases separately.
Vertical structures of the unstable modes for this reduced model are compared with those of the full model in Figs. 5 and 6. Having only one free-troposphere moisture mode, the reduced system cannot capture the evolving vertical structures of the free-troposphere humidity as seen in the full model and in observations (e.g., Kiladis et al. 2009). Allowing five modes for temperature and moisture adds another free-troposphere moisture mode and substantially improves this aspect but at the cost of interpretability and is not pursued in this paper. Aside from this difference, the vertical structures of the unstable modes in the reduced and full models show broad consistency.
One nonuniqueness in the above procedure is whether to reduce the order of w or x first. Reducing x first to four modes then reducing w to two modes produces mostly similar but slightly less accurate results. This nonuniqueness represents a subjective aspect of the procedure advocated here.



5. Separation of fast and slow manifolds
Let us first examine the role of the slowest-decaying eigenvector of

(left) Temperature and (right) specific humidity structures of the slowest-decaying eigenvector for the full linear response function
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(left) Temperature and (right) specific humidity structures of the slowest-decaying eigenvector for the full linear response function
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
(left) Temperature and (right) specific humidity structures of the slowest-decaying eigenvector for the full linear response function
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
The decay rate of the slowest-decaying eigenvector of

(right) Linear growth rates and (left) the phase speed of the unstable modes for the reduced sixth-order model for the RCE case with full radiative feedback, with unaltered eigenvalues (black), with the eigenvalue of the slowest-decaying eigenvector set to zero (blue), and with the eigenvalue of the slowest-decaying eigenvector set to −104 day−1 (red).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(right) Linear growth rates and (left) the phase speed of the unstable modes for the reduced sixth-order model for the RCE case with full radiative feedback, with unaltered eigenvalues (black), with the eigenvalue of the slowest-decaying eigenvector set to zero (blue), and with the eigenvalue of the slowest-decaying eigenvector set to −104 day−1 (red).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
(right) Linear growth rates and (left) the phase speed of the unstable modes for the reduced sixth-order model for the RCE case with full radiative feedback, with unaltered eigenvalues (black), with the eigenvalue of the slowest-decaying eigenvector set to zero (blue), and with the eigenvalue of the slowest-decaying eigenvector set to −104 day−1 (red).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1































Within the framework of the reduced-order model, the sum of T1, q, and hb can be interpreted as the column-integrated moist static energy (MSE), while T2 (a vertical dipole) does not contribute to the column-integrated MSE. Therefore
Within the fast subspace, an implied value for the boundary layer mode hb can be computed from
To keep the upper-right 2 × 2 elements the identity matrix and the lower-left 2 × 2 elements a diagonal matrix in the fast subspace portion of Eq. (4), I have slightly readjusted the vertical profiles of T1, T2, w1, and w2 (shown as dashed line in Fig. 8). The ability to split the subspaces cleanly is worth the need for this small readjustment.
With this separation, I can focus on the fast manifold when studying the convectively coupled waves, where the slow manifold is not essential, as described in the next section. The fast and slow manifold separation can also be used to better understand the stationary mode, where the fast manifold may be considered as steady state. This will be described in Part II.
6. Convectively coupled wave dynamics



a. Recast into the form of previous simple models
A number of additional simplifications and manipulations are possible so that the system can be cast in a form similar to that of previous studies such as Mapes (2000), Khouider and Majda (2006), and K08.





Calculated parameters for the RCE and TOGA cases. Parameters found to be key to the stability differences are in bold. Rayleigh damping coefficient ε is prescribed not calculated but is included here for completeness.








While the QE relationship can be equivalently expressed in qf or in hb, the hb form [Eq. (10)] ties more directly to the more familiar idea of a shallow QE and provides a better connection to K08, where it is used to provide a closure on convective heating. A free-troposphere humidity anomaly qf is implied by Eq. (7) given










A positive γ0 means that without
One could choose to eliminate













Equations (14) and (16), together with the QE relationship [Eq. (10)] and the parameterization of the shape of convective heating [Eq. (12)], form a complete system, which will be referred to as the simple convectively coupled wave model. Note that only two equations from Eq. (11) are explicitly used, and the third is replaced by the QE relationship, which provides the closure on J1. Also, Eq. (10) is a weaker version of the QE relationship than the version without the time derivative, and the latter can be used to eliminate a spurious mode with zero growth rate and phase speed that arises as a result.
The growth rates and the phase speeds of the unstable modes from this system for the RCE and TOGA cases, with parameters shown in Table 1, are given in Fig. 11. The wave structures are similar to those in the right column of Fig. 5 and are omitted.

(right) Linear growth rates and (left) the phase speed of the unstable modes for the simple model of convectively coupled waves described by Eqs. (10), (12), (14), and (16) for the RCE case with Rayleigh damping of 0.1 (black) and 1 day−1 (blue) and for the TOGA case with Rayleigh damping of 0.1 day−1 (red).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1

(right) Linear growth rates and (left) the phase speed of the unstable modes for the simple model of convectively coupled waves described by Eqs. (10), (12), (14), and (16) for the RCE case with Rayleigh damping of 0.1 (black) and 1 day−1 (blue) and for the TOGA case with Rayleigh damping of 0.1 day−1 (red).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
(right) Linear growth rates and (left) the phase speed of the unstable modes for the simple model of convectively coupled waves described by Eqs. (10), (12), (14), and (16) for the RCE case with Rayleigh damping of 0.1 (black) and 1 day−1 (blue) and for the TOGA case with Rayleigh damping of 0.1 day−1 (red).
Citation: Journal of the Atmospheric Sciences 75, 9; 10.1175/JAS-D-18-0092.1
This system is essentially that of K08, which builds upon Mapes (2000) and Khouider and Majda (2006), with additions from Kuang (2011). However, the parameter estimates and the model formulations here are better justified. In particular, Eqs. (13) and (16) and the parameter values listed in Table 1 make it clear that, all else being equal, negative second-mode convective heating (or stratiform heating) moistens the free troposphere and reduces the boundary layer MSE (and the opposite is true for congestus heating), consistent with our expectations. The opposite behavior in K08 can now be seen as caused by lumping the effect of free-troposphere humidity into the effect of the second-mode heating: in the default case of K08, γ0 = γT = 0, so the qf terms in Eqs. (13) and (16) can be lumped into the J2 terms, giving an effective d2 and b2, denoted as
b. Comparison with K08
K08 provided rough estimates of the parameters for the TOGA case through regressions. Given the strong correlations among different variables, this was acknowledged as “educated guesses of plausible values.” We are now in a position to evaluate those estimates. A comparison of parameters used in K08 and those computed here is shown in Table 2. For this comparison, the qf and hb variables are scaled so that the b1 and d1 parameters computed here are the same as those in the K08 study. Table 2 shows that the parameter estimates in K08 are largely consistent with those computed here. The main differences are 1) in γT, which was neglected in the default case of K08 and represents the congestus damping effect identified by Mapes (2000); 2) in FK08, which was underestimated by a factor of 2 in K08 but was found to not fundamentally affect the stability (see Fig. 4 of K08); and 3) in γq, which controls the strength of the moist stratiform instability and was underestimated by ~20% in K08.
Parameter values for the TOGA case used in K08 and calculated here (the values are scaled to facilitate comparison; see text for more explanations).


The above discussions thus place the simple model analyzed in detail in K08 on a firmer footing. Readers are referred to Mapes (2000) and K08 for detailed analysis of the model and discussions of the dynamics of convectively coupled waves, where a direct stratiform instability, which relies on a top-heavy shape of convective heating anomalies in the absence of anomalies in free-troposphere humidity and second-mode temperature, and a moisture-stratiform instability, which relies on the effect of free-troposphere humidity on the shape of convection, were identified.
c. Differences between RCE and TOGA
The more systematic estimates of the parameters now also allow us to better understand the reason for the stability differences between different cases.
Experimentations with the simple convectively coupled wave model [Eqs. (10), (12), (14), and (16)] show that the parameters highlighted in bold in Table 1 are responsible for the differing stability between the RCE and TOGA cases. These are parameters that control the shape of anomalous convective heating. The parameter γ0 is considerably larger in the RCE case. This indicates that without qf and
Further experiments with the simple convectively coupled wave model confirm the findings of Kuang (2010) that in the TOGA case, zeroing γq almost entirely removes the unstable convectively coupled waves, implying that the moisture-stratiform instability is the dominant mechanism, while in the RCE case, zeroing γ0 or γq significantly weakens but does not remove the convectively coupled wave instability, which is only removed when both γ0 and γq are set to zero, implying that both the direct-stratiform instability and the moisture-stratiform instability contribute to the convectively coupled wave instability in RCE.
There are additional notable parameter differences between the two cases: in the TOGA case, the moistening of the free troposphere by anomalous second-mode heating J2, d2 in Eq. (13), is much weaker compared to that in the RCE case, presumably because the TOGA case has a moister free troposphere (e.g., Fig. 2 of Kuang 2010) and there is less evaporation of rain. While the second-mode heating J2, when positive, has been referred to as stratiform heating, it should be recognized that the term “stratiform heating” is used here in a loose sense and can be produced by greater mass flux in the upper troposphere than in the lower troposphere and does not necessarily require evaporation of rain. Similarly, the reduction of boundary layer MSE by anomalous second-mode heating [b2 = −d2; Eq. (16)] is also weaker in the TOGA case, as less rain evaporation leads to weaker precipitation-driven downdrafts. The large difference in the d2 (and b2) values between the TOGA and RCE cases however turns out to have only a secondary effect on the stability of convectively coupled waves. This is because J2 can also affect qf through the QE relationship [most clearly seen through Eq. (9)], reducing the sensitivity of the system to the d2 parameter.
7. Conclusions
In studies of moist convecting atmospheres, simple models have long played a vital role in providing insights. However, formulations and parameters in these simple models’ treatment of convection are often based on intuition and not systematically justified.
In this paper, I have presented a procedure to systematically construct simple models for the linear stability of moist convecting atmospheres, along with their parameters, from a more comprehensive model, such as a CSRM.
In this study, I have focused on the prototype problem of convection coupling with large-scale 2D linear gravity waves. For a given reference state, I start by constructing linear response functions of the CSRM. These linear response functions, when coupled with large-scale linear wave dynamics, provide a suitable model for this problem. For an RCE reference state with full radiative feedback, this linear-response-function-based model gives two branches of unstable modes: a propagating convectively coupled wave branch and a stationary branch. The stationary branch is unstable only when radiative feedback is included, while the convectively coupled wave branch is less affected by radiative feedback.
I then used a modular order-reduction procedure from control theory to reduce the linear-response-function-based model to a system of six ODEs, which are found to capture the essential features of the full model. The basis functions obtained from the order-reduction procedure match those used in previous simple models remarkably well, thus more formally justifying their use.
The reduced-order system is then split into a slow and a fast manifold, and the former is found essential for the stationary mode but not for the convectively coupled waves. This finding indicates that the essential convectively coupled wave dynamics are contained within the fast manifold.
Through a further QE assumption based on the fastest-decaying eigenvector, the fast manifold of the reduced-order model is transformed into a form similar to that of prior simple models of convectively coupled waves, whose parameters are thereby computed from the CSRM. The results show that the formulation used in K08 lumped the effect of free-troposphere moisture on convective moistening and boundary layer MSE into the effect of second-mode convective heating. The procedure here also made clear that, in previous simple models of convectively coupled waves, variations in the column-integrated MSE have been implicitly filtered out. Comparisons of the formulations and parameters place the previous simple models and the insights derived from them on a firmer footing.
With better quantifications of the parameters, we can also better understand the stability difference between different reference states. In particular, the different stability of convectively coupled waves for the RCE and TOGA cases found in Kuang (2010) can now be attributed to their differences in the control of the shape of convective heating.
In this paper, I have focused on convectively coupled waves. In Part II, I shall examine the stationary mode and the effect of radiative feedback by considering the interaction between the slow and the fast manifolds, with the fast manifold set to a steady state, which represents an extension of the moisture mode and weak temperature gradient approach currently used in such problems.
Acknowledgments
This work was supported by NSF Grant AGS-1649819 and NOAA Grant NA17OAR4310260. I thank Brian Mapes, Chris Bretherton, and an anonymous reviewer for their careful reviews and edits. The Harvard Odyssey cluster provided the computing resources for this work.
REFERENCES
Andersen, J. A., and Z. Kuang, 2008: A toy model of the instability in the equatorially trapped convectively coupled waves on the equatorial beta plane. J. Atmos. Sci., 65, 3736–3757, https://doi.org/10.1175/2008JAS2776.1.
Arnold, N. P., and D. A. Randall, 2015: Global-scale convective aggregation: Implications for the Madden-Julian oscillation. J. Adv. Model. Earth Syst., 7, 1499–1518, https://doi.org/10.1002/2015MS000498.
Blanco, J. E., D. S. Nolan, and S. N. Tulich, 2016: Convectively coupled Kelvin waves in aquachannel simulations: 1. Propagation speeds, composite structures, and comparison with aquaplanets. J. Geophys. Res. Atmos., 121, 11 287–11 318, https://doi.org/10.1002/2016JD025004.
Bretherton, C. S., P. N. Blossey, and M. Khairoutdinov, 2005: An energy-balance analysis of deep convective self-aggregation above uniform SST. J. Atmos. Sci., 62, 4273–4292, https://doi.org/10.1175/JAS3614.1.
Chang, C. P., 1970: Westward propagating cloud patterns in tropical Pacific as seen from time-composite satellite photographs. J. Atmos. Sci., 27, 133, https://doi.org/10.1175/1520-0469(1970)027<0133:WPCPIT>2.0.CO;2.
Collins, W. D., and Coauthors, 2006: The Community Climate System Model version 3 (CCSM3). J. Climate, 19, 2122–2143, https://doi.org/10.1175/JCLI3761.1.
Emanuel, K. A., 1987: An air–sea interaction model of intraseasonal oscillations in the tropics. J. Atmos. Sci., 44, 2324–2340, https://doi.org/10.1175/1520-0469(1987)044<2324:AASIMO>2.0.CO;2.
Emanuel, K. A., J. D. Neelin, and C. S. Bretherton, 1994: On large-scale circulations in convecting atmospheres. Quart. J. Roy. Meteor. Soc., 120, 1111–1143, https://doi.org/10.1002/qj.49712051902.
Emanuel, K. A., A. A. Wing, and E. M. Vincent, 2014: Radiative-convective instability. J. Adv. Model. Earth Syst., 6, 75–90, https://doi.org/10.1002/2013MS000270.
Fuchs, Z., and D. J. Raymond, 2007: A simple, vertically resolved model of tropical disturbances with a humidity closure. Tellus, 59A, 344–354, https://doi.org/10.1111/j.1600-0870.2007.00230.x.
Glover, K., 1984: All optimal Handel norm approximations of linear multivariable systems and their L, ∞ -error bounds. Int. J. Control, 39, 1115–1193, https://doi.org/10.1080/00207178408933239.
Grabowski, W. W., and M. W. Moncrieff, 2001: Large-scale organization of tropical convection in two-dimensional explicit numerical simulations. Quart. J. Roy. Meteor. Soc., 127, 445–468, https://doi.org/10.1002/qj.49712757211.
Haertel, P. T., and G. N. Kiladis, 2004: Dynamics of 2-day equatorial waves. J. Atmos. Sci., 61, 2707–2721, https://doi.org/10.1175/JAS3352.1.
Hendon, H. H., and B. Liebmann, 1991: The structure and annual variation of antisymmetric fluctuations of tropical convection and their association with Rossby–gravity waves. J. Atmos. Sci., 48, 2127–2140, https://doi.org/10.1175/1520-0469(1991)048<2127:TSAAVO>2.0.CO;2.
Holloway, C. E., 2017: Convective aggregation in realistic convective-scale simulations. J. Adv. Model. Earth Syst., 9, 1450–1472, https://doi.org/10.1002/2017MS000980.
Holloway, C. E., and S. J. Woolnough, 2016: The sensitivity of convective aggregation to diabatic processes in idealized radiative-convective equilibrium simulations. J. Adv. Model. Earth Syst., 8, 166–195, https://doi.org/10.1002/2015MS000511.
Holloway, C. E., A. A. Wing, S. Bony, C. Muller, H. Masunaga, T. S. L’Ecuyer, D. D. Turner, and P. Zuidema, 2017: Observing convective aggregation. Surv. Geophys., 38, 1199–1236, https://doi.org/10.1007/s10712-017-9419-1.
Iacono, M. J., J. S. Delamere, E. J. Mlawer, M. W. Shephard, S. A. Clough, and W. D. Collins, 2008: Radiative forcing by long-lived greenhouse gases: Calculations with the AER radiative transfer models. J. Geophys. Res., 113, D13103, https://doi.org/10.1029/2008JD009944.
Keil, A., and J. L. Gouze, 2003: Model reduction of modular systems using balancing methods. Munich University of Technology Tech. Rep., 23 pp.
Khairoutdinov, M. F., and D. A. Randall, 2003: Cloud resolving modeling of the ARM summer 1997 IOP: Model formulation, results, uncertainties, and sensitivities. J. Atmos. Sci., 60, 607–625, https://doi.org/10.1175/1520-0469(2003)060<0607:CRMOTA>2.0.CO;2.
Khairoutdinov, M. F., C. DeMott, and D. Randall, 2008: Evaluation of the simulated interannual and subseasonal variability in an AMIP-style simulation using the CSU multiscale modeling framework. J. Climate, 21, 413–431, https://doi.org/10.1175/2007JCLI1630.1.
Khouider, B., and A. J. Majda, 2006: A simple multicloud parameterization for convectively coupled tropical waves. Part I: Linear analysis. J. Atmos. Sci., 63, 1308–1323, https://doi.org/10.1175/JAS3677.1.
Kiladis, G. N., M. C. Wheeler, P. T. Haertel, K. H. Straub, and P. E. Roundy, 2009: Convectively coupled equatorial waves. Rev. Geophys., 47, RG2003, https://doi.org/10.1029/2008RG000266.
Kuang, Z., 2008a: Modeling the interaction between cumulus convection and linear gravity waves using a limited-domain cloud system–resolving model. J. Atmos. Sci., 65, 576–591, https://doi.org/10.1175/2007JAS2399.1.
Kuang, Z., 2008b: A moisture-stratiform instability for convectively coupled waves. J. Atmos. Sci., 65, 834–854, https://doi.org/10.1175/2007JAS2444.1.
Kuang, Z., 2010: Linear response functions of a cumulus ensemble to temperature and moisture perturbations and implications for the dynamics of convectively coupled waves. J. Atmos. Sci., 67, 941–962, https://doi.org/10.1175/2009JAS3260.1.
Kuang, Z., 2011: The wavelength dependence of the gross moist stability and the scale selection in the instability of column-integrated moist static energy. J. Atmos. Sci., 68, 61–74, https://doi.org/10.1175/2010JAS3591.1.
Kuang, Z., 2012: Weakly forced mock Walker cells. J. Atmos. Sci., 69, 2759–2786, https://doi.org/10.1175/JAS-D-11-0307.1.
Lindzen, R. S., 1974: Wave-CISK in the tropics. J. Atmos. Sci., 31, 156–179, https://doi.org/10.1175/1520-0469(1974)031<0156:WCITT>2.0.CO;2.
Mapes, B. E., 2000: Convective inhibition, subgrid-scale triggering energy, and stratiform instability in a toy tropical wave model. J. Atmos. Sci., 57, 1515–1535, https://doi.org/10.1175/1520-0469(2000)057<1515:CISSTE>2.0.CO;2.
Mapes, B. E., 2016: Gregarious convection and radiative feedbacks in idealized worlds. J. Adv. Model. Earth Syst., 8, 1029–1033, https://doi.org/10.1002/2016MS000651.
Muller, C. J., and I. M. Held, 2012: Detailed investigation of the self-aggregation of convection in cloud-resolving simulations. J. Atmos. Sci., 69, 2551–2565, https://doi.org/10.1175/JAS-D-11-0257.1.
Nasuno, T., H. Tomita, S. Iga, and H. Miura, 2008: Convectively coupled equatorial waves simulated on an aquaplanet in a global nonhydrostatic experiment. J. Atmos. Sci., 65, 1246–1265, https://doi.org/10.1175/2007JAS2395.1.
Neelin, J. D., I. M. Held, and K. H. Cook, 1987: Evaporation–wind feedback and low-frequency variability in the tropical atmosphere. J. Atmos. Sci., 44, 2341–2348, https://doi.org/10.1175/1520-0469(1987)044<2341:EWFALF>2.0.CO;2.
Safonov, M. G., and R. Y. Chiang, 1989: A Shur method for balanced-truncation model reduction. IEEE Trans. Autom. Control, 34, 729–733, https://doi.org/10.1109/9.29399.
Straub, K. H., and G. N. Kiladis, 2002: Observations of a convectively coupled Kelvin wave in the eastern Pacific ITCZ. J. Atmos. Sci., 59, 30–53, https://doi.org/10.1175/1520-0469(2002)059<0030:OOACCK>2.0.CO;2.
Takayabu, Y. N., 1994: Large-scale cloud disturbances associated with equatorial waves—Part I: Spectral features of the cloud disturbances. J. Meteor. Soc. Japan, 72, 433–449, https://doi.org/10.2151/jmsj1965.72.3_433.
Takayabu, Y. N., and T. Nitta, 1993: 3-5 day-period disturbances coupled with convection over the tropical Pacific Ocean. J. Meteor. Soc. Japan, 71, 221–246, https://doi.org/10.2151/jmsj1965.71.2_221.
Tulich, S. N., D. A. Randall, and B. E. Mapes, 2007: Vertical-mode and cloud decomposition of large-scale convectively coupled gravity waves in a two-dimensional cloud-resolving model. J. Atmos. Sci., 64, 1210–1229, https://doi.org/10.1175/JAS3884.1.
Wang, B., 1988: Dynamics of tropical low-frequency waves: An analysis of the moist Kelvin wave. J. Atmos. Sci., 45, 2051–2065, https://doi.org/10.1175/1520-0469(1988)045<2051:DOTLFW>2.0.CO;2.
Webster, P. J., and R. Lukas, 1992: TOGA COARE: The Coupled Ocean–Atmosphere Response Experiment. Bull. Amer. Meteor. Soc., 73, 1377–1416, https://doi.org/10.1175/1520-0477(1992)073<1377:TCTCOR>2.0.CO;2.
Wheeler, M., and G. N. Kiladis, 1999: Convectively coupled equatorial waves: Analysis of clouds and temperature in the wavenumber–frequency domain. J. Atmos. Sci., 56, 374–399, https://doi.org/10.1175/1520-0469(1999)056<0374:CCEWAO>2.0.CO;2.
Wheeler, M., G. N. Kiladis, and P. J. Webster, 2000: Large-scale dynamical fields associated with convectively coupled equatorial waves. J. Atmos. Sci., 57, 613–640, https://doi.org/10.1175/1520-0469(2000)057<0613:LSDFAW>2.0.CO;2.
Wing, A. A., and K. A. Emanuel, 2014: Physical mechanisms controlling self-aggregation of convection in idealized numerical modeling simulations. J. Adv. Model. Earth Syst., 6, 59–74, https://doi.org/10.1002/2013MS000269.
Wing, A. A., and T. W. Cronin, 2016: Self-aggregation of convection in long channel geometry. Quart. J. Roy. Meteor. Soc., 142, 1–15, https://doi.org/10.1002/qj.2628.
Wing, A. A., K. Emanuel, C. E. Holloway, and C. Muller, 2017: convective self-aggregation in numerical simulations: A review. Surv. Geophys., 38, 1173–1197, https://doi.org/10.1007/s10712-017-9408-4.