1. Mesoscale parameterizations









2. Mesoscale diffusivity 






a. Does the MLT (2.1) overestimate the diffusivity?






















b. Mean flow–mesoscales interaction












c. Previous forms of the suppression factor

















Vertical profiles of the eddy kinetic energy equation (3.2) (solid line) vs WOCE (2002) data (black dots). The form of the barotropic contribution
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
3. Eddy kinetic energy: Vertical profile













To put relation (3.2) in the proper context, we recall that in the absence of a model for the vertical profile of the eddy kinetic energy, authors suggested heuristic relations with the purpose of endowing the mesoscale diffusivity with an enhanced surface behavior. The need to do so had been advocated by several authors, and Farneti et al. (2015) have recently pointed out that failure to implement a 3D form of
4. Eddy surface kinetic energy 

Since no parameterization of
a. Baroclinic instabilities













b. Dissipation





















c. Shear contribution













5. Depth of the D regime
In the A regime, diapycnal fluxes are negligible and the flow is primarily along isopycnal surfaces. By contrast, in the upper layers’ D regime, diapycnal fluxes are large and water parcels no longer move along isopycnal surfaces. In the literature, the mixed layer depth (MLD) is often used to define the extent of the D regime. Gregory (2000, their section 2) presented reasons for the inadequacy of the MLD to represent the near-isothermal upper layers: MLD is a variable in both space and time, there is only limited geographical similarity between the MLD, and the penetration of, say, temperature change and no well-defined isothermal layer is apparent in the global average temperature profile (see Fig. 1 of Gregory 2000).
In the KPP vertical mixing scheme that we employ in this work (Large et al. 1994), the extent of the vertical mixing translates into a criterion to estimate the boundary layer depth (HBL) in terms of the bulk Richardson number



6. The OGCM
We employed the 3D diffusivity tensor for an arbitrary tracer given in section 7 of C18, the mesoscale diffusivity (2.4), and the nonlocal version of the KPP vertical mixing scheme (Large et al. 1994) in the GISS ER model, which is the ocean component of the coupled NASA GISS model E (Russell et al. 1995, 2000; Liu et al. 2003). An early version of the revised E2-R code was run in a stand-alone mode (Danabasoglu et al. 2014). It employs a mass coordinate approximately proportional to pressure with 32 vertical layers with thickness from ≈12 m near the surface to ≈200 m at the bottom. The horizontal resolution is 1.25° (longitude) by 1° (latitude). It is a fully dynamic, non-Boussinesq, mass-conserving, free-surface ocean model using a quadratic upstream scheme for the horizontal advection of tracers and a centered difference scheme in the vertical. An 1800-s time step is used for tracer evolution. Sea ice dynamics, thermodynamics, and ocean–sea ice coupling are represented as in phase 5 of the Coupled Model Intercomparison Project (CMIP5) model-E configuration (Schmidt et al. 2014), save that here ice is on the ocean model grid. To force the model we used the Coordinated Ocean-Ice Reference Experiment I (CORE-I) protocol (Griffies et al. 2009) with fluxes obtained from bulk formulas, the inputs to which are the ocean model surface state and atmospheric conditions derived from a synthesis of observations that repeat the seasonal cycle of a “normal year.” The results we present in the next section correspond to the output of the final 3 years of a 300-yr run.
7. Results
Figures 2 and 3 exhibit surface values and the zonal average of the suppression factor

Surface value of the function ϖ [(2.6)] and its zonal average.
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1

Zonal average of the function ϖ [(2.6)] at all depths.
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
In Fig. 4 we show the depth profiles averaged between 61° and 56°S and between 110° and 80°W of the mean velocity (solid line), eddy drift velocity (dotted line), and square root of eddy kinetic energy (dashed line). If one compares these results with those in the lower panel of Fig. 10b of Tulloch et al. (2014), one notices several differences: the present eddy kinetic energy is steeper in the upper 200 m, in Tulloch et al. (2014) the drift velocities

Depth profiles averaged between 61° and 56°S and between 110° and 80°W of mean velocity (solid line), eddy drift velocity (dotted line), and square root of eddy kinetic energy (dashed line).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
In Fig. 5 we show the vertical profile of the mesoscale diffusivity in (2.5)–(2.6) versus the NATRE data (Ferrari and Polzin 2005; Bates et al. 2014). The role of the suppression factor

Vertical profiles of the mesoscale diffusivity from (2.5)–(2.6) (solid line) vs the data at NATRE (dots; Ferrari and Polzin 2005). The dashed line denotes the model result with the suppression factor
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
In Fig. 6 we show the 2D diffusivity

Comparison of the 2D diffusivity
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
Figure 7 shows global maps of the 3D mesoscale diffusivity from (2.5)–(2.6) averaged over the 298th–300th years of the simulation: 6-m depth (top panel) and 2-km depth (bottom panel). The decrease with depth is an indication of the surface enhanced eddy kinetic energy shown in Fig. 1. The results can be compared with those of Fig. 8b of Klocker and Abernathey (2014).

Global maps of the diffusivity from (2.5)–(2.6) averaged over the 498th–500th years of the simulation: (top) 6-m depth and (bottom) 2003-m depth.
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
The upper panel of Fig. 8 shows a map of

(top) Map of the present model surface eddy kinetic energy Ks [(4.7)]. (bottom) Surface eddy kinetic energy from the T/P data (Scharffenberg and Stammer 2010).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
The upper panel of Fig. 9 shows a map of the ACC surface eddy kinetic energy from (4.7), and the lower panel shows the corresponding T/P data (Scharffenberg and Stammer 2010).

(top) Map of the present model ACC surface eddy kinetic energy [(4.7)]. (bottom) The T/P data (Scharffenberg and Stammer 2010).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
Figure 10 shows the zonal average of (4.7), the T/P data, and the results of a high-resolution numerical simulation by Farneti et al. (2010; CM2.4 version of the GFDL code, 1/4° resolution, 27.75 km at the equator, 13.8 km at 60°N, and 9 km at 70°N/S). These results are the only case in which we can compare model results with both T/P data and numerical simulations. On average, the simulation results are smaller than those of the present model that are close to the data. There is an instructive message: at ±40° and ±60° relation (4.7) underpredicts the surface eddy kinetic energy with respect to the T/P data. Though treated heuristically, the shear contribution in (4.10) represented by the blue and red dots brings the model results into better agreement with the T/P data.

Zonal average of the present model surface eddy kinetic energy [(4.7)] (solid line) vs T/P data (dashed line). The red and blue dots include the contributions of shear as described in (4.10). The dotted line represents the zonal average of the surface eddy kinetic energy from the numerical simulations of Farneti et al. (2010) using the CM2.4 version of the GFDL code.
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
Figure 11 shows the ACC surface diffusivity from (2.5)–(2.6), which compares well with the numerical simulations shown in Fig. 3f of Sallée et al. (2008) and in Fig. 3 of Le Sommer et al. (2011).

Map of the ACC surface diffusivity from (2.5)–(2.6). The results compare well with Fig. 3f of Sallée et al. (2008) and Fig. 3 of Le Sommer et al. (2011).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
Figure 12 shows the time series of the globally and annually averaged temperature and salinity. Of the seven OGCMs results shown in Fig. 3 of Griffies et al. (2009), two exhibit a clear cooling tendency and one reaches stationarity only after 500 years while the other exhibits no tendency toward stationarity; the other five cases exhibit warming in time and reach stationarity after approximately 250 years. The result of the present model (black dash–dotted curve) exhibits a warming with a magnitude in the middle of the range of the other warming models. Of the seven OGCMs shown in Fig. 4 of Griffies et al. (2009), two have large fresh drifts, one has a moderate salty drift, and the rest have small drifts. The present model salinity drift is among the smallest.

Time series of globally and annually averaged ocean (top) potential temperature and (bottom) salinity with (2.5)–(2.6) (dash–dotted thick black curves) compared with the results of seven OGCMs shown in Figs. 3–4 of Griffies et al. (2009).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
In Fig. 13 we show the Atlantic meridional streamfunction (1 Sv = 106 m3 s−1) computed with the diffusivity from (2.5)–(2.6). The observational estimates are 16 ± 2 Sv (48°N; Ganachaud 2003; Lumpkin et al. 2008), 15 ± 2 Sv (42°N; Ganachaud and Wunsch 2000), and 13 ± 2 Sv (42°N; Lumpkin and Speer 2003). Since this is a key oceanic feature, it is important to assess how well it is reproduced by different parameterizations. Of the seven OGCMs shown in Fig. 23 of Griffies et al. (2009), only three, the NCAR-POP, GFDL-MOM, and MPI OGCMs, yield results comparable to the data. The present model yields about 20 Sv within the observed values.

Atlantic overturning circulation with (2.5)–(2.6). Results of seven OGCMs are shown in Fig. 23 of Griffies et al. (2009).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
In Fig. 14 we show the meridional heat transport (PW = 1015 W) in the global ocean averaged over the 298th–300th years of the simulation with (2.4) together with results of seven OGCMs from Fig. 22 of Griffies et al. (2009). Among the latter results there are discernable outliers while the present model result is well within the group of OGCMs that yield values of the order of 1 PW.

Meridional heat transport in the global ocean averaged over the 491st–500th years of the simulation with (2.5)–(2.6) (dash–dotted thick black curve in each figure) compared with the results of seven OGCMs presented in Fig. 22 of Griffies et al. (2009).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
In Fig. 15 we present the vertically integrated mass transport through the Drake Passage with the diffusivity from (2.5)–(2.6) (dash–dotted thick black curve) compared with the results of seven OGCMs presented in Fig. 18 of Griffies et al. (2009) together with the observational data of 137 ± 7.8 Sv (Cunningham et al. 2003). The spread of the results is rather large, and only two OGCMs seem capable of reproducing the observed data. The present model with the diffusivity from (2.5)–(2.6) reaches stationarity in less than 100 years.

Vertically integrated mass transport through the Drake Passage with (2.5)–(2.6) (dash–dotted thick black curve) compared with the results of seven OGCMs presented in Fig. 18 of Griffies et al. (2009) with the observational data of 137 ± 7.8 Sv (Cunningham et al. 2003).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
Figure 16 (top panels) shows the 3-yr average mesoscale vertical buoyancy flux from C18 [their (2.3), (3.4a), and (3.6)] (blue lines), while the vertical buoyancy fluxes due to small-scale turbulence from the KPP scheme are in red. The positive mesoscale vertical buoyancy flux corresponds to upward heat transport, and the corresponding positive portion of the red curves is due to the nonlocality in the KPP buoyancy flux. The lower panels show the globally averaged temperature difference from the surface value, corresponding to the 3D versus the 2D mesoscale diffusivity

(top) Annually averaged mesoscale vertical buoyancy flux from C18 [their (2.3), (3.4a), and (3.6)] (blue). The vertical buoyancy fluxes from small-scale turbulence from the KPP scheme are in red. The positive portion of the red curves is due to the presence of nonlocality in the buoyancy flux. (bottom) Globally averaged temperature difference from the surface value. The blue line corresponds to the 2D model results with the mesoscale diffusivity
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
Figure 17 shows the temperature drift, a variable relevant to climate studies. Griffies et al. (2009) presented the temperature drifts corresponding to 14 OGCMs (their Figs. 5 and 6) and concluded that “it is not trivial to uncover a mechanistic understanding of the drift patterns exhibited by the various models.” In the present case, with the exception of the uppermost layers, in the bulk of the ocean the size of the drift is quite small, less than 1°C.

Zonally averaged temperature minus observations (°C) with (2.5)–(2.6).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
Figure 18 shows that summer and winter ACC mixed layer depths MLD from the present model reproduce satisfactorily the data of Dong et al. (2008). It must be recalled that obtaining the correct MLD has not been easy, that is, of the seven OGCMs results in Fig. 15 of Griffies et al. (2009), only two reproduce the data. Boé et al. (2009) have emphasized the relation of MLD with the ocean heat uptake since models predicting deep mixed layers are transferring more of the radiative perturbation to the deep ocean, reducing surface warming. We recall that the MLD is the result of two competing processes, small scale turbulence that destratifies the flow yielding deep MLD and mesoscales that do the opposite, restratify the flow leading to a shallow MLD. We employed the KPP mixing scheme used by previous authors and changed the mesoscale model. Since the KKP mixing scheme contains the critical bulk Richardson number

ACC (top) summer and (bottom) winter mixed layer depths (m). The results reproduce satisfactorily the data by Dong et al. (2008).
Citation: Journal of Physical Oceanography 49, 4; 10.1175/JPO-D-18-0123.1
8. Conclusions and future work
The primary goal of this work was to parameterize the 3D mesoscale diffusivity
a. Mesoscale Reynolds stresses
The mesoscale Reynolds stresses enter the shear production term in (4.8) and represent the mesoscale–mean flow interaction, which can be negative, representing eddies feeding the mean flow (e.g., in the Gulf Stream) and positive, representing the mean flow feeding eddies.
b. Eddy compensation
The eddy compensation process represents the response of the eddy field to an increase in the wind stress. It is relevant to climate studies (Bishop et al. 2016), since in its absence, deep ocean natural carbon can be brought to the surface hindering the absorption of atmospheric CO2. Eddy-resolving OGCMs have shown that mesoscales provide a partial compensating mechanism but coarse-resolution OGCMs have been less successful in reproducing it (Gent and Danabasoglu 2011; Farneti et al. 2015; Gent 2016; Poulsen et al. 2018). The hope is that the new 3D diffusivity will improve the skill of coarse-resolution OGCMs in reproducing the compensation process,
c. Ocean heat uptake
Gregory (2000) has pointed out that heat downward advection–upward diffusion, which is the reverse of a widely used model, may be a more appropriate model of oceanic heat transfer leading to the conclusion that the correct description of oceanic vertical heat transport processes is of “comparable importance” to the “climate sensitivity” in predicting climate change. Kuhlbrodt and Gregory (2012) showed that many ocean codes are too diffusive with a large capacity for downward heat transport [for a recent discussion of the 0–700-m and 700–2000-m heat content, see Cheng et al. (2017, e.g., their Fig. 6)]. The results shown in Fig. 16 indicate that a 3D mesoscale diffusivity entails a more stratified deep ocean thus hopefully avoiding excessive heat uptake. Prediction of the correct MLD is important to climate studies since models predicting deep mixed layers are transferring more of the radiative perturbation to the deep ocean, reducing surface warming (and vice versa).
The authors thank two anonymous referees whose valuable criticism helped us to achieve a more focused presentation. The authors also thank Dr. S. Dong for providing the Southern Ocean MLD data. Resources supporting this work were provided by the NASA High-End Computing (HEC) Program through the NASA Center for Climate Simulation (NCCS) at the Goddard Space Flight Center. VMC dedicates this work to Aura Sofia Canuto.
APPENDIX A
Adiabatic–Diabatic Regimes
a. A regime

































b. Drift velocity 








c. D regime
As discussed in C18, the parameterization of the D regime was not easy as attested by the several heuristic expressions that were proposed in the period 1999–2010. Since no model turned out to be superior to the others, many OGCMs adopted the simpler approach of prolonging the A-regime parameterization into the D regime using heuristic tapering functions. The latter is a numerical expedient rather than a physical model since in the D-regime water parcels no longer move along isopycnal surfaces as they do in the A regime and the diapycnal fluxes are large; furthermore, such an approach lacks predictive power and is therefore unsuitable to study future climate scenarios. In 2011, two of the authors (Canuto and Dubovikov 2011) used invariance principles and physical arguments to derive a D-regime parameterization that was assessed with a mesoscale resolving numerical simulation (Luneva et al. 2015). Two major projects, CMIP5 (Downes and Hogg 2013) and the CORE-I and -II simulations (Griffies et al. 2009; Farneti et al. 2015), employed a variety of mesoscale parameterizations but none of them included the drift velocity
d. D-regime buoyancy flux







APPENDIX B
Derivation of (2.6)


















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The WOCE (2002) website does not provide EKE but time series of velocity profiles. We separated the latter into a mean (denoted by an overbar) and a fluctuating part (denoted by a prime):
Consider the mean buoyancy equation,