1. Introduction
In oceans worldwide, for example, along the mainstream of the Gulf Stream, in the Gulf of Mexico, and in the Arctic Ocean’s Beaufort Gyre, the low-frequency variability of the deep current (below 1000 m) over steep topography is reportedly dominated by topographic Rossby waves (TRWs) with periods of several days to hundreds of days (e.g., Thompson and Luyten 1976; Thompson 1977; Hogg 1981, 2000; Johns and Watts 1986; Pickart and Watts 1990; Hamilton 1990, 2007, 2009; Peña-Molino et al. 2012; Zhao and Timmermans 2018; Hamilton et al. 2019). TRWs are thought to be excited by cross-isobathic motion when fluid columns are stretched and compressed over steep topography, for example, the deep fluctuations of the Gulf Stream and warm-core rings (Pickart 1995) or cross-isobath meander of deep eddies moving along slopes (Oey 2008). In the abyssal ocean, for example, at the Pacific Yap–Mariana Junction, which is the choke point of the northward transport route of the Pacific meridional overturning circulation (Siedler et al. 2004), energetic TRWs are believed to play an important role in modulating deep circulation (Ma et al. 2019), which can change the transport of heat and biogeochemical substances in the global ocean and hence affect the climate and ecosystem (Kawano et al. 2006; Chen and Tung 2014).
The South China Sea (SCS) is the largest marginal sea in the northwestern Pacific Ocean, where the deep basin is enclosed below 2000 m (Fig. 1). Like the Gulf of Mexico, the SCS provides suitable conditions for the generation of TRWs owing to a combination of complex topography (Huang et al. 2017), Loop Current (or eddy shedding) from western boundary current (WBC) intrusion (Nan et al. 2011, 2015), and eddies (Xiu et al. 2010; Chen et al. 2011). Shu et al. (2014) suggested that interactions between TRWs and planetary Rossby waves may be a mechanism for the deep upwelling associated with the meridional overturning circulation in the abyssal SCS. Moreover, TRWs and wave-related mixing effects cannot only govern the generation and evolution of deep circulation in the SCS (Quan and Xue 2019), but also affect the vertical coupling of the SCS circulation between the upper and middle layers by modulating the pressure field throughout the water column (Quan and Xue 2018; Cai and Gan 2020). Because the SCS circulation acts as an important link in heat and mass exchange between the Pacific and Indian Oceans (Qu et al. 2006; Yu et al. 2007; Gordon et al. 2012; Li et al. 2019), the modulation of the SCS circulation by TRWs may change the heat and water transport and affect the regional climate and ecosystem.

Topography (m) of the SCS. Black solid lines denote the 200- and 2000-m isobaths. The blue star denotes the mooring site X.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

Topography (m) of the SCS. Black solid lines denote the 200- and 2000-m isobaths. The blue star denotes the mooring site X.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
Topography (m) of the SCS. Black solid lines denote the 200- and 2000-m isobaths. The blue star denotes the mooring site X.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
However, there was little research focusing on TRWs in the SCS in recent decades until Shu et al. (2016) reported pioneering observations near the Nansha Islands in the southern SCS. Their results revealed persistent and energetic TRWs below 1400 m with periods of 9–14 days and a wavelength of approximately 82 km. The wave-induced bottom current can be as large as approximately 10 cm s−1, which is one order of magnitude larger than the ambient deep flow. This finding implies that TRWs in areas of steep topography may play a role comparable to that of internal tides in modulating the deep SCS circulation. TRWs were also observed recently at two moorings over the slope of the northern SCS (Wang et al. 2019). The waves around the Dongsha Islands showed a peak spectral energy at approximately 14.5 days and can account for more than 40% of the total variance of the bottom velocity fluctuations. A ray tracing model indicated that the energy of TRWs propagated westward along the slope. Both Shu et al. (2016) and Wang et al. (2019) identified the energy source of TRWs in the SCS as mesoscale eddies in the upper layer. These eddies have a spatiotemporal scale similar to that of the waves and cause the deep-layer water column to cross the isobaths under the conservation of potential vorticity (PV).
These studies provide interesting insight into the interpretation of the variability of the deep flow and the relationships between currents in different layers of the SCS. However, because TRWs depend strongly on environmental parameters such as the topographic gradient, depth, and stratification (Reid and Wang 2004), too few observations are available to describe TRWs and their energy pathways in the entire SCS. Moreover, it was found that the background circulation in the Gulf of Mexico not only can provide energy to deep eddies by baroclinic instability and thus excite TRWs (Oey 2008), but also can effectively change the group velocity, wavelength, and direction of the waves (Oey and Lee 2002). Unlike the Gulf of Mexico or other large marginal seas, the SCS has a unique sandwich-like circulation system (i.e., cyclonic circulation in the upper and deep layers and anticyclonic circulation in the middle layer; separated by ~500 and ~2000 m), and significant westward intensification occurs along the slope in each layer (Chen and Xue 2014; Xu and Oey 2014; Gan et al. 2016; Zhu et al. 2017; Cai et al. 2020). However, previous studies did not consider the effects of the SCS circulation on TRWs. Therefore, important issues remain to be addressed, such as the distributions of the wave properties (e.g., wavelength and period) and the wave energy paths in the entire deep SCS, as well as the connection between the TRWs and the SCS circulation. In this study, we attempted to answer these questions by analyzing the observations and high-resolution reanalysis data.
The rest of this paper is organized as follows. The data, TRW theory, and ray tracing model are briefly presented in section 2. Section 3 describes the basin-scale spatiotemporal features (e.g., the period, wavelength, and vertical trapping scale) of the deep-current variability in the SCS, which are used to identify typical TRWs. The propagations of TRWs in the abyssal SCS with and without considering the effect of the background circulation are investigated in section 4. A specific event is used as an example to illustrate possible sources of TRW energy in section 5. Finally, section 6 summarizes the study.
2. Data and methods
a. Data
Mooring site X (19.7°N, 115.6°E) was located on the slope southwest of the Dongsha Islands (blue star in Fig. 1), where the water depth is ~2000 m. The mooring was designed to observe the bottom flow and equipped with an upward-looking 600-kHz acoustic Doppler current profiler (ADCP). The sampling time interval was 30 min, and the vertical resolution was 5 m with four observational depths (1981.62, 1986.62, 1991.62, and 1996.62 m). Velocity profiles were continuously recorded for about 8 months from 12 August 2011 to 12 April 2012, and the percentage of valid data was higher than 95%. Note that currents at four observational depths were basically in phase but decreased in magnitude downward (not shown). Hence, we use the data at the top level (1981.62 m; ~20 m above the bottom) for analysis to minimize the impact of bottom friction and better reveal the characteristics of TRWs.
The periods of TRWs are shorter than 100 days, and the temporal variation of the wave properties is determined mainly by the stratification, which changes slightly from year to year in the deep SCS. Therefore, the 6-yr data of the Hybrid Coordinate Ocean Model + Navy Coupled Ocean Data Assimilation (HYCOM + NCODA) global 1/12° Analysis (GLBv0.08; https://www.hycom.org/) from 2013 to 2018 cover a long enough period to resolve these subinertial waves and are used in this study. The system uses a 3D variational scheme to assimilate available satellite altimeter observations, satellite and in situ sea surface temperature, and in situ vertical temperature and salinity profiles from XBTs, Argo floats, and moored buoys (Cummings 2005; Cummings and Smedstad 2013). The 3-hourly data include the sea surface height, 3D horizontal velocity, temperature, and salinity. The horizontal resolution is about 8.4–9.2 km at 5°–25°N and there are 41 layers in the water column from 0 to 5500 m (1000, 1250, 1500, 2000, 2500, 3000, 4000, 5000, and 5500 m for the deep layer).
The HYCOM reanalysis data have been validated to well reproduce the multiscale physical processes in the world oceans and are widely used in the relevant energy analysis, such as the eddy available potential energy (APE) field in the global ocean, energetics of eddy–mean flow interactions in the Brazil Current, seasonal cycle of the eddy kinetic energy (EKE) in the Kuroshio Extension, and energy transfer underlying the eddy shedding from the Kuroshio intrusion in the northeastern SCS (Luecke et al. 2017; Magalhães et al. 2017; Yang and Liang 2018; Zhang et al. 2017). Different from the open oceans, the observations for assimilation are so limited in the SCS that HYCOM reanalysis in this region is close to a free-running case. Even so, the weakly assimilative HYCOM reanalysis can still reproduce the abyssal SCS circulation better than other seven quasi-global model products (Xie et al. 2013). Moreover, the presence of TRWs in the deep SCS had been revealed by Shu et al. (2014) using the 7-yr data of HYCOM GLBa0.08. The latest GLBv0.08 has a higher vertical and temporal resolution than GLBa0.08, and hence is believed to be reliable for our study.
b. TRW dynamics

Schematic of the relationships among the topographic gradient ∇h (black vector), wavenumber vector K (blue vector), and group velocity Cg (red vector) in the Northern Hemisphere when NhK/f ≈ O(1) or larger. The term θ is the clockwise angle between K and ∇h. The wavenumber vector K is nearly perpendicular to the group velocity Cg. The group velocity Cg points upslope when K points downslope for 0 < θ < π/2 (solid vectors), and vice versa for π/2 < θ < π (dashed vectors).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

Schematic of the relationships among the topographic gradient ∇h (black vector), wavenumber vector K (blue vector), and group velocity Cg (red vector) in the Northern Hemisphere when NhK/f ≈ O(1) or larger. The term θ is the clockwise angle between K and ∇h. The wavenumber vector K is nearly perpendicular to the group velocity Cg. The group velocity Cg points upslope when K points downslope for 0 < θ < π/2 (solid vectors), and vice versa for π/2 < θ < π (dashed vectors).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
Schematic of the relationships among the topographic gradient ∇h (black vector), wavenumber vector K (blue vector), and group velocity Cg (red vector) in the Northern Hemisphere when NhK/f ≈ O(1) or larger. The term θ is the clockwise angle between K and ∇h. The wavenumber vector K is nearly perpendicular to the group velocity Cg. The group velocity Cg points upslope when K points downslope for 0 < θ < π/2 (solid vectors), and vice versa for π/2 < θ < π (dashed vectors).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
c. Ray tracing model
3. Features of TRWs in the deep SCS
Using the theory of Rhines (1970), we investigate the deep-current variability to identify the most typical TRWs in the deep SCS by setting three validation conditions: 1) the in situ deep-layer energy falling into the TRW period range is significant; 2) the spatiotemporal structures of the deep-current fluctuations match the characteristics of TRWs; and 3) the frequency and wavenumber conform to the dispersion relation of TRWs. To evaluate the possible occurrences and parameters of TRWs, we use the smoothed topography and stratification in calculation to avoid the influence of small-scale variations (Hamilton 2007, 2009). We smooth the topography by using a Shapiro filter to eliminate small-scale undulations but retain large-scale terrain features. In the deep SCS, the buoyancy frequency N is a weak function of depth. Thus, the 6-yr-mean N averaged over the water column 200 m above the seabed is used here.
a. Deep circulation in the SCS
On the basis of the basin-integrated vorticity, the cyclonic circulation below 2000 m is conventionally defined as the deep SCS circulation (Wang et al. 2011; Lan et al. 2013; Wang et al. 2016). Figure 3 shows the 6-yr-mean circulation averaged from 2000 m to the bottom in the deep SCS on the basis of HYCOM GLBv0.08. Basin-scale cyclonic circulation with an intensified WBC clearly predominates in the deep SCS and involves interior subbasin-scale cyclonic and anticyclonic gyres. The depth-averaged currents in most areas are slower than 0.02 m s−1, whereas those along the deep western boundary can be as fast as 0.06 m s−1. The modeled deep WBC (DWBC) is probably overestimated relative to the value of 0.02 m s−1 observed by Zhou et al. (2017), but the axis position, core depth, and current width are similar (not shown). Although the mean circulation in the abyssal SCS appears very weak, it is not as quiet as it seems. Energetic low-frequency “noise” has been observed in the deep SCS circulation (Shu et al. 2016; Wang et al. 2019) and will be described in the following sections.

6-yr-mean deep circulation (m s−1) averaged from 2000 m to the bottom in the abyssal SCS based on HYCOM GLBv0.08 (2013–18).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

6-yr-mean deep circulation (m s−1) averaged from 2000 m to the bottom in the abyssal SCS based on HYCOM GLBv0.08 (2013–18).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
6-yr-mean deep circulation (m s−1) averaged from 2000 m to the bottom in the abyssal SCS based on HYCOM GLBv0.08 (2013–18).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
b. Period
The 8-month observations indicate persistent and energetic intraseasonal fluctuations of bottom flow at site X, consistent with the findings in the southeast of the Dongsha Islands (Wang et al. 2019). Despite strong contributions due to tides, the intraseasonal oscillations filtered at periods of 5–90 days account for 40.2% of the standard deviation (STD) of total kinetic energy (KE) at site X (Fig. 4a). Spectral analysis further indicates that the significant KE of intraseasonal oscillations over the 95% confidence level concentrates in the period band of 5–20 days (red solid line in Fig. 4b). Within this significant period band, the STD ellipse of bottom velocity shows a small oblateness with the major principal axis (about 0.02 m s−1) parallel to the local isobath (red ellipse in Fig. 4c).

(a) Time series of the observed bottom KE (m2 s−2) at site X for raw (thin gray line) and 5–90-day bandpassed (thick black line) data. (b) Power spectra of 5–90-day bandpassed bottom KE at site X for observations (red solid line) and HYCOM data (blue solid line). The significant components over the 95% confidence level are shaded. (c) STD ellipses of 5–20-day bandpassed bottom velocity at site X for observations (red) and HYCOM data (blue). Contours denote the isobaths. (d) Significant period bands (days) of the depth-integrated KE below 2000 m in the deep SCS at the 95% confidence level from HYCOM data. Black lines denote the isobaths. The white space means that there is no significant variability of deep-layer KE at the 95% confidence level falling in the intraseasonal time scale (5–90 days) at these locations.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

(a) Time series of the observed bottom KE (m2 s−2) at site X for raw (thin gray line) and 5–90-day bandpassed (thick black line) data. (b) Power spectra of 5–90-day bandpassed bottom KE at site X for observations (red solid line) and HYCOM data (blue solid line). The significant components over the 95% confidence level are shaded. (c) STD ellipses of 5–20-day bandpassed bottom velocity at site X for observations (red) and HYCOM data (blue). Contours denote the isobaths. (d) Significant period bands (days) of the depth-integrated KE below 2000 m in the deep SCS at the 95% confidence level from HYCOM data. Black lines denote the isobaths. The white space means that there is no significant variability of deep-layer KE at the 95% confidence level falling in the intraseasonal time scale (5–90 days) at these locations.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
(a) Time series of the observed bottom KE (m2 s−2) at site X for raw (thin gray line) and 5–90-day bandpassed (thick black line) data. (b) Power spectra of 5–90-day bandpassed bottom KE at site X for observations (red solid line) and HYCOM data (blue solid line). The significant components over the 95% confidence level are shaded. (c) STD ellipses of 5–20-day bandpassed bottom velocity at site X for observations (red) and HYCOM data (blue). Contours denote the isobaths. (d) Significant period bands (days) of the depth-integrated KE below 2000 m in the deep SCS at the 95% confidence level from HYCOM data. Black lines denote the isobaths. The white space means that there is no significant variability of deep-layer KE at the 95% confidence level falling in the intraseasonal time scale (5–90 days) at these locations.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
In conjunction with the observations, we use HYCOM GLBv0.08 to reveal the deep-flow variability over the entire SCS. Except for a weaker intensity in power spectrum density (PSD), the HYCOM reanalysis can generally reproduce the subinertial motions within the frequency band similar to the observations (blue solid line in Fig. 4b). Regardless of tidal effects, the modeled intraseasonal fluctuations can account for 54.3% of the STD of total bottom KE at site X. The modeled STD ellipse of bandpassed bottom velocity is basically oriented in the same direction as the observations, with a comparable major axis but a shorter minor axis (blue ellipse in Fig. 4c). It implies that the modeled fluctuations are close to the observations in strength but more rectilinear. In spite of some uncertainties, HYCOM GLBv0.08 is believed to be feasible for our study and hence is employed for the following analysis.
To determine the dominant time scales of the deep-flow variability in the entire SCS, we conduct power spectrum analysis of the depth-integrated KE below 2000 m. Most of the spectra meeting the 95% confidence level fall in the intraseasonal time scale (5–90 days) and are concentrated over sloping topography (Fig. 4d). The significant periods typically range from 5 to 60 days, but individual bands (bounded by the local minimum and maximum periods) vary spatially. In the eastern, northeastern, and northwestern regions of the basin, the frequencies are relatively high, and the bands are narrower, namely, 5–20 and 5–40 days. In the northern and southern slope regions, the frequencies decrease offshore, and the bands tend to be broader (from 5–20 to 5–60 days). In the DWBC and central seamount regions, the frequencies are relatively low, and most of the bands are 20–60 days.
A comparison of Fig. 4d with the distributions of the smoothed topographic gradient (|∇h|, Fig. 5a) and the 6-yr-mean Brunt–Väisälä frequency averaged over the bottom 200 m (N, Fig. 5b) in the deep SCS reveals that the periods tend to be shorter for steeper topography and stronger stratification, and vice versa. The relationships between the significant periods and the environmental parameters (i.e., |∇h| and N) show some typical characteristics of TRWs if Eq. (6) is considered. Figure 5c exhibits the theoretical minimum period Pmin = 2π/(N|∇h|) allowed by the TRW dispersion relation. In the interior basin where both |∇h| and N are small, Pmin can even reach 60 days or longer. However, such theoretical long-period TRWs probably do not exist in the present model because there is no significant variability of deep-layer KE at the 95% confidence level falling in the intraseasonal time scale (<90 days) at these locations (see the white space in Fig. 4d). In the eastern, northeastern, and northwestern areas of the basin, both |∇h| and N are large. The theoretical minimum period Pmin in these regions is generally shorter than 20 days, suggesting that high-frequency TRWs can be supported. As a result, the maximum periods in Fig. 4d are shorter than 40 days in these regions. By contrast, in the DWBC and central seamount regions, although |∇h| is large, the stratification is weak. Consequently, we have Pmin ≥ 20 days or longer in these regions. Hence, the short-period (<20 days) fluctuations in Fig. 4d almost disappear. In the northern and southern slope regions, where |∇h| and N decrease gradually offshore, Pmin as well as the maximum periods in Fig. 4d tend to be longer seaward. These environmentally dependent features suggest that the deep SCS intrinsically favors these periodic fluctuations. To further identify the TRWs from these intraseasonal fluctuations, more wave-related features must be examined.

(a) Smoothed topographic gradient |∇h|, (b) 6-yr-mean Brunt–Väisälä frequency N (10−3 s−1) averaged over the bottom 200 m, and (c) theoretical minimum period (days) Pmin = 2π/(N|∇h|) allowed by the TRW dispersion relation. Black lines denote the 2000-, 3000-, and 4000-m isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

(a) Smoothed topographic gradient |∇h|, (b) 6-yr-mean Brunt–Väisälä frequency N (10−3 s−1) averaged over the bottom 200 m, and (c) theoretical minimum period (days) Pmin = 2π/(N|∇h|) allowed by the TRW dispersion relation. Black lines denote the 2000-, 3000-, and 4000-m isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
(a) Smoothed topographic gradient |∇h|, (b) 6-yr-mean Brunt–Väisälä frequency N (10−3 s−1) averaged over the bottom 200 m, and (c) theoretical minimum period (days) Pmin = 2π/(N|∇h|) allowed by the TRW dispersion relation. Black lines denote the 2000-, 3000-, and 4000-m isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
c. Spatiotemporal structure

STD ellipses of velocities at 3000 m filtered within the local period band at the locations numbered cyclonically from 1 to 28. Contours denote the ratio between the topographic beta βtop and the planetary beta β. The gray line represents the 3000-m isobath. Areas shallower than 2000 m are masked, and the white space indicates the location where the ratio βtop/β is smaller than 5.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

STD ellipses of velocities at 3000 m filtered within the local period band at the locations numbered cyclonically from 1 to 28. Contours denote the ratio between the topographic beta βtop and the planetary beta β. The gray line represents the 3000-m isobath. Areas shallower than 2000 m are masked, and the white space indicates the location where the ratio βtop/β is smaller than 5.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
STD ellipses of velocities at 3000 m filtered within the local period band at the locations numbered cyclonically from 1 to 28. Contours denote the ratio between the topographic beta βtop and the planetary beta β. The gray line represents the 3000-m isobath. Areas shallower than 2000 m are masked, and the white space indicates the location where the ratio βtop/β is smaller than 5.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

(a) Ratio, (b) coherence, and (c) phase lag of the KE spectra between 2500 and 3000 m at location 6 (blue line) and location 20 (red line) in Fig. 6. The significant period bands of the KE at the 95% confidence level are shaded.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

(a) Ratio, (b) coherence, and (c) phase lag of the KE spectra between 2500 and 3000 m at location 6 (blue line) and location 20 (red line) in Fig. 6. The significant period bands of the KE at the 95% confidence level are shaded.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
(a) Ratio, (b) coherence, and (c) phase lag of the KE spectra between 2500 and 3000 m at location 6 (blue line) and location 20 (red line) in Fig. 6. The significant period bands of the KE at the 95% confidence level are shaded.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
d. Dispersion relation
The results indicate that more than half of the locations in Fig. 4d are valid (Fig. 8), where the ratios between the STD of the bandpassed deep KE (filtered within the individual band at each location in Fig. 4d) and the STD of the total deep KE (integrated from 2000 m to the bottom) exceed 40% in the DWBC and central seamount regions, and even reach 70% over slopes in the northern and southern SCS. This result suggests that the TRWs are energetic and contribute greatly to the deep-current variability over steep topography in the SCS. These results are consistent with the observations at site X and the findings of Hamilton (2009), who found that the TRWs at 10–100 days can account for more than 80% of the total variance of the deep flow in the Gulf of Mexico. According to the energy-weighted estimates, the trapping scales generally range from hundreds to thousands of meters at different frequencies in the deep SCS, and the corresponding wavelengths range from 100 to 500 km (not shown). Note that wavelengths shorter than 100 km are barely resolved by the model owing to the limited resolution. Therefore, the highly bottom-trapped TRWs at short wavelengths are not discussed in this paper.

Ratio between the STD of the bandpassed deep KE (filtered within the individual band at each location in Fig. 4d) and the STD of the total deep KE (integrated from 2000 m to the bottom) at locations where TRWs are identified.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

Ratio between the STD of the bandpassed deep KE (filtered within the individual band at each location in Fig. 4d) and the STD of the total deep KE (integrated from 2000 m to the bottom) at locations where TRWs are identified.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
Ratio between the STD of the bandpassed deep KE (filtered within the individual band at each location in Fig. 4d) and the STD of the total deep KE (integrated from 2000 m to the bottom) at locations where TRWs are identified.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
To illustrate the dispersion diagrams of TRWs in different regions of the deep SCS, the results from six representative sites are shown in Fig. 9. As shown in Fig. 10, the sites are located over the slope west of the Luzon Strait (site A; the ratio in Fig. 8 is 64%), southeast of the Dongsha Islands (site B; the ratio is 68%), in the central seamount region (site C; the ratio is 57%), in the DWBC region (site D; the ratio is 45%), north of the Nansha Islands (site E; the ratio is 65%), and west of the Mindoro Strait (site F; the ratio is 49%). At each location, because the environmental parameters h, ∇h, and N exhibit spatial inhomogeneity, the distributions of the wave properties are expected to show anisotropy in geographic space and complicated overlap in wavenumber space (Rhines and Bretherton 1973; Pickart 1995; Oey and Lee 2002; Hamilton 2009). At site A, the TRWs with high frequencies have shorter wavelengths (100–200 km). The TRWs at sites B–F have similar frequencies, but their wavelengths differ greatly. Long wavelengths (300–500 km) appear in the west (site D) and south (site E), whereas intermediate wavelengths (150–300 km) are present in the north (site B). In the central and eastern SCS (sites C and F), the wavelengths show a broad distribution ranging from 150 to 500 km. These results are generally in the theoretical range of the TRW dispersion relation estimated using the typical environmental parameters for the deep SCS.

Dispersion diagrams of TRWs at six representative sites shown in Fig. 10. For the typical environmental parameters |∇h| = 0.02, N = 1 × 10−3 s−1, f = 4 × 10−5 s−1, and h = 3000 m in the deep SCS, the shaded area denotes the theoretical range of the TRW dispersion relation based on Eqs. (5) and (6) for θ values of 5°–30°.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

Dispersion diagrams of TRWs at six representative sites shown in Fig. 10. For the typical environmental parameters |∇h| = 0.02, N = 1 × 10−3 s−1, f = 4 × 10−5 s−1, and h = 3000 m in the deep SCS, the shaded area denotes the theoretical range of the TRW dispersion relation based on Eqs. (5) and (6) for θ values of 5°–30°.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
Dispersion diagrams of TRWs at six representative sites shown in Fig. 10. For the typical environmental parameters |∇h| = 0.02, N = 1 × 10−3 s−1, f = 4 × 10−5 s−1, and h = 3000 m in the deep SCS, the shaded area denotes the theoretical range of the TRW dispersion relation based on Eqs. (5) and (6) for θ values of 5°–30°.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

TRW rays in the deep SCS (light orange lines). Results from site A (9.3 and 11 days), site B (24.2 and 30.3 days), site C (20.2 and 48.4 days), site D (26.9 and 48.4 days), site E (13.4 and 14.2 days), and site F (15.1 and 22 days) are highlighted for analysis. Rays at relatively high (low) frequencies are shown in red (blue). Arrows indicate the directions of the wavenumber vectors. Contours indicate isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

TRW rays in the deep SCS (light orange lines). Results from site A (9.3 and 11 days), site B (24.2 and 30.3 days), site C (20.2 and 48.4 days), site D (26.9 and 48.4 days), site E (13.4 and 14.2 days), and site F (15.1 and 22 days) are highlighted for analysis. Rays at relatively high (low) frequencies are shown in red (blue). Arrows indicate the directions of the wavenumber vectors. Contours indicate isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
TRW rays in the deep SCS (light orange lines). Results from site A (9.3 and 11 days), site B (24.2 and 30.3 days), site C (20.2 and 48.4 days), site D (26.9 and 48.4 days), site E (13.4 and 14.2 days), and site F (15.1 and 22 days) are highlighted for analysis. Rays at relatively high (low) frequencies are shown in red (blue). Arrows indicate the directions of the wavenumber vectors. Contours indicate isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
In this section, we set three constraints to identify the most typical TRWs in the deep SCS. 1) The intraseasonal fluctuations must be significant at the 95% confidence level at each location. This constraint ensures that the KE on the relevant time scale is prominent in the full energy spectrum. 2) The intraseasonal fluctuations must be in phase and bottom intensified. This constraint enables energy-weighted estimation of the vertical trapping scale and wavenumber magnitude. 3) The significant frequency and the corresponding wavenumber must be consistent with the theoretical dispersion relation. Note that these constraints are probably overly restrictive and may eliminate potential sites where TRWs coexist with other strong locally forced intraseasonal components. However, these strict constraints ensure that we consider only robust TRWs that are hardly interfered by other processes and may have a better chance of being observed in the SCS.
4. Propagation of TRWs in the deep SCS
Now that we have revealed the spatiotemporal features of TRWs in the deep SCS, we investigate the wave propagation in this section. First, we trace the TRW rays to obtain various wave properties along their paths, without considering the background flow. Then we integrate the background flow into the model to assess the effects of the basin-scale circulation on wave propagation.
a. Environmental fields
The ray tracing model uses four environmental parameters: N, h, hx, and hy. All the parameters are taken from HYCOM GLBv0.08. Under the WKB approximation, these parameters should vary slowly in space and time. Hence, we use the smoothed topography and stratification in the model. Finally, a 2D spline is fitted to the smoothed bathymetry and the buoyancy frequency so that h, ∇h, and N can be computed at any location in the domain.
b. Initial positions and wavenumber vectors of rays
To trace the TRW rays, the initial position and wavenumber vector, as well as the frequency defined for each ray, should be assigned. The frequencies and wavenumber vectors from the locations that passed the validation in section 3 can be used in the model. To clearly illustrate the wave propagation in different areas of the deep SCS, TRW rays at different frequencies are released at as many locations as possible. Because the wave periods range from 5 to 60 days, the model is integrated forward for 60 days with a time step of 1 h to cover all the possible periods.
c. Results without considering background flow
According to Eq. (9), because the frequency is constant along each ray path, rays tend to become more aligned with the local isobath as the topography steepens or the stratification becomes stronger. In addition, TRWs at higher frequencies have a larger angle θ for the given environmental parameters. Consequently, for rays at different frequencies released at the same place, the high-frequency rays show a stronger climbing effect that enables them to cross the isobaths, whereas the low-frequency rays tend to veer along the isobaths when they encounter steep topography. This behavior explains why the high-frequency TRW released at site B can propagate continuously westward onto the upper slope, whereas the low-frequency one must detour around the Xisha Islands. The rays emanating from other sites exhibit similar behavior.

Properties of the 48.4-day TRW along the ray path (blue line) released at site D in Fig. 10: (a) ratio of βtop to β; (b) internal Rossby deformation radius LD (km); (c) angle θ (°); (d) wavelength (km); (e) trapping scale
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

Properties of the 48.4-day TRW along the ray path (blue line) released at site D in Fig. 10: (a) ratio of βtop to β; (b) internal Rossby deformation radius LD (km); (c) angle θ (°); (d) wavelength (km); (e) trapping scale
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
Properties of the 48.4-day TRW along the ray path (blue line) released at site D in Fig. 10: (a) ratio of βtop to β; (b) internal Rossby deformation radius LD (km); (c) angle θ (°); (d) wavelength (km); (e) trapping scale
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
The ray traverses the topography at a βtop-dominated angle θ and terminates early around the tenth day. Because the frequency (ω = 1.5 × 10−6 s−1) is constant along the ray, the ratio βtop/β (Fig. 11a) should be greater than 7.5 to sustain the dispersion relation if we use the last values of LD = 142 km and sin(4°) = 0.07 near 9°N (Figs. 11b,c) in the estimation. In fact, the value of βtop/β, tends to be less than 5, and the ray terminates, indicating that the topography is too gentle to support TRWs of certain frequencies. The differences in the refraction and termination of TRW rays at different frequencies in Fig. 10 reflect the environmentally dependent screening processes of the waves in the abyssal SCS.
In contrast to the short wavelengths (e.g., 82 and 13 km) with small trapping scales (325 and 238 m) observed by Shu et al. (2016) and Wang et al. (2019), the modeled TRW wavelength exceeds 150 km and is larger than the deformation radius LD. Consequently, the wave is weakly bottom trapped; the trapping scale,
d. Effect of background circulation on TRW rays

TRW rays with (blue solid lines) and without (red dashed lines) considering the background flow, released at site A (9.3 days), site B (24.2 days), site C (48.4 days), site D (48.4 days), site E (13.4 days), and site F (22 days). Colored arrows indicate the 6-yr-mean currents averaged over the bottom 200 m. Contours indicate isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

TRW rays with (blue solid lines) and without (red dashed lines) considering the background flow, released at site A (9.3 days), site B (24.2 days), site C (48.4 days), site D (48.4 days), site E (13.4 days), and site F (22 days). Colored arrows indicate the 6-yr-mean currents averaged over the bottom 200 m. Contours indicate isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
TRW rays with (blue solid lines) and without (red dashed lines) considering the background flow, released at site A (9.3 days), site B (24.2 days), site C (48.4 days), site D (48.4 days), site E (13.4 days), and site F (22 days). Colored arrows indicate the 6-yr-mean currents averaged over the bottom 200 m. Contours indicate isobaths.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
These results indicate that background flow with horizontal shear can affect the properties (e.g., group speed, wavelength, and direction) of TRWs during propagation if the flow velocity is comparable to the group velocity. The group velocity of TRWs is proportional to the wavelength for given environmental parameters (i.e., N, h, and ∇h). Note that the wavelengths estimated from HYCOM GLBv0.08 are longer than 100 km. The unresolved short-wavelength (<100 km) TRWs in the abyssal SCS are likely to be more sensitive to the background circulation.
5. Discussion
Following studies of the Gulf of Mexico (Oey and Lee 2002; Hamilton 2009), we use a specific event as an example to illustrate the possible sources of TRW energy in the abyssal SCS. On the basis of the results in section 3, we employ multiscale energy and vorticity analysis (MS-EVA; Liang and Anderson 2007; Liang 2016) to separate the original data into three scale windows: the nonstationary background flow window (>64 days; ϖ = 0), the mesoscale fluctuation window (8–64 days; ϖ = 1), and the high-frequency fluctuation window (<8 days; ϖ = 2). Note that the window bounds are exponential functions of base 2 for the MS-EVA. We then examine the terms in Eqs. (A13) and (A14) in each window to determine the intra and interscale energetics of the deep SCS. The MS-EVA procedure is described in detail in the appendix. The results from the window ϖ = 1 (variables with superscript “1”) include information on TRWs and thus are selected for analysis.
Most of the previous studies tended to attribute the energy source of TRWs to the mesoscale perturbations (e.g., eddies) in the upper layer (Hamilton 2009; Shu et al. 2016; Ma et al. 2019; Wang et al. 2019). To reflect the wave pattern and the interactions of the mesoscale motions between layers, we use the filtered vorticity from the window ϖ = 1 for illustration. In addition, to exhibit the robust TRWs and the related energetics without the interferences from other strong locally forced non-TRW components, we take site B in Fig. 10 where the TRWs have been identified under the strict constraints as a representative station for analysis. Because TRWs seem to be most active in the slope region of the northern SCS (Fig. 8), Fig. 13a shows horizontal maps of the relative vorticity ζ1 (as a fraction of f) at 500 and 2500 m in the northern SCS at a 6-day interval from day 753 to day 765 (note that we use day numbers in this study for convenience). Within this period, a strong perturbation with positive ζ1 sweeps over site B (indicated by the green star) at 500 m. After a slight lag, negative ζ1 appears at site B in the deep layer and merges into the alternating cyclonic–anticyclonic meanders along the slope. To further illustrate the relationship between the upper and deep layers during this period, we analyze the evolution of the relative vorticity throughout the water column at site B (Fig. 13b). Wavelike fluctuations are clearly present below 2000 m, and the deep relative vorticity is opposite to that above. From a depth-integration viewpoint, this opposite vertical pattern indicates the process of PV adjustment to the changing depth of the interface between layers (see the variation of the isopycnals). When strong perturbations with positive/negative ζ1 sweep over from above, the isopycnals are strongly deformed, and the deep vorticities become stronger. This phenomenon is most apparent in the event on days 753–765, in which an intense perturbation passes by and cause a dramatic rise of the isopycnals. Because the deep intraseasonal fluctuations at site B were identified as TRWs in section 3, the generation and intensification of the waves are believed to be closely associated with mesoscale perturbations in the upper layer. This is consistent with observations in the SCS and Gulf of Mexico (Shu et al. 2016; Wang et al. 2019; Hamilton 2009).

(a) Horizontal maps of the relative vorticity ζ1 (as a fraction of f) at (left) 500 and (right) 2500 m in the northern SCS on days 753 to 765. The green star indicates site B in Fig. 10. (b) Profile of the relative vorticity ζ1 (as a fraction of f) at site B. Black contours indicate the isopycnals (kg m−3).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

(a) Horizontal maps of the relative vorticity ζ1 (as a fraction of f) at (left) 500 and (right) 2500 m in the northern SCS on days 753 to 765. The green star indicates site B in Fig. 10. (b) Profile of the relative vorticity ζ1 (as a fraction of f) at site B. Black contours indicate the isopycnals (kg m−3).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
(a) Horizontal maps of the relative vorticity ζ1 (as a fraction of f) at (left) 500 and (right) 2500 m in the northern SCS on days 753 to 765. The green star indicates site B in Fig. 10. (b) Profile of the relative vorticity ζ1 (as a fraction of f) at site B. Black contours indicate the isopycnals (kg m−3).
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
To more thoroughly examine the dynamics of how the deep fluctuations are excited or intensified, Fig. 14 shows the energy reservoir and energetics in the deep layer at site B (note that the implicit F terms and negligible transfer terms Γ2→1 are not shown). The largest KE1 bursts appear in the event on days 753–765. During this event, the positive pressure work

Profiles of the energy reservoir (J m−3) and energetics (10−6 W m−3) for (left) KE1 and (right) APE1 at site B.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

Profiles of the energy reservoir (J m−3) and energetics (10−6 W m−3) for (left) KE1 and (right) APE1 at site B.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
Profiles of the energy reservoir (J m−3) and energetics (10−6 W m−3) for (left) KE1 and (right) APE1 at site B.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
The results from site B illustrate two possible sources of TRW energy: mesoscale perturbation in the upper layer and large-scale background flow in the deep layer. The former provides KE by deforming the isopycnals to do work (i.e., pressure work), whereas the latter transfers the APE by baroclinic instability (i.e., baroclinic transfer). It seems to be a frequent forcing problem rather than an individual response because Wang et al. (2019) used observations to show numerous mesoscale eddies crossing the area of concern and supporting the deep fluctuations, which are also well reproduced in the data we used (not shown). This result is similar to the findings in the Gulf of Mexico that the deep-layer energy on the mesoscale window comes primarily from the upper layer via pressure work and secondarily from baroclinic instability in the deep layer (Yang et al. 2020; Maslo et al. 2020). More details about the basinwide energetics of the abyssal SCS for the entire intraseasonal regime (8–128 days) can be referred to our recent study (ready for submission).
6. Summary
TRWs in the abyssal SCS were investigated using observations and high-resolution reanalysis data. These energetic waves can account for more than 40% of the deep KE variability in the DWBC and central seamount regions, and this proportion can even reach 70% over slopes in the northern and southern SCS. The wave-induced flow shows columnar (i.e., in phase) structure in which the speed increases toward the bottom. Most of the major principal axes of the corresponding STD ellipses are parallel to the local isobaths, suggesting that the low-frequency components are predominant in the TRW-related spectra. Wave properties such as the period (5–60 days), wavelength (100–500 km), and trapping scale (102–103 m) depend strongly on the environmental parameters of the SCS, including the stratification, water depth, and topographic gradient, and hence show significant spatial variation.
A ray tracing model indicated that the TRW energy propagates along the steep topography and is directed upslope with phase propagation offshore. High-frequency TRWs exhibit a stronger climbing effect than low-frequency ones and hence can move further onto the upper slope. For TRW with a certain frequency, the variations of the wavelength and trapping scale are dominated by the topographic beta βtop, whereas the group velocity is more sensitive to the internal Rossby deformation radius LD. Moreover, background circulation with horizontal shear can affect the wavelength and direction of TRWs during propagation if the flow velocity is comparable to the group velocity, particularly in the central, southern, and eastern SCS. The differences in the refraction and termination of TRW rays at different frequencies suggest the presence of environmentally dependent screening processes of the waves in the abyssal SCS.
A case study shows that the robust mesoscale perturbation with positive/negative relative vorticity in the upper layer can distort the isopycnals and excite an opposite vorticity in the deep layer owing to PV adjustment to the changing depth of the interface between layers. During this process, a perturbation from above injects energy into the deep layer by pressure work to excite or intensify TRWs. In addition, the large-scale background circulation in the deep layer tends to transfer the APE to the TRWs through baroclinic instability. Note that this process seems to occur at locations where the topography is not steep enough to suppress the baroclinic instability.
Our aim in this study was to reveal a comprehensive dynamic picture of TRWs against the background of the unique SCS circulation. However, owing to the limited model resolution, waves with short wavelengths (<100 km), which might interact more strongly with the circulation, are not discussed in this paper. Observations and numerical models with higher resolution will be used in our future studies to obtain the full TRW-related spectra and achieve better understanding of the characteristics and dynamics of TRWs and their roles in the multiscale energetics of the abyssal SCS.
Acknowledgments
This study is supported by the National Natural Science Foundation of China (42006007; 41906016; 42006009), the China Postdoctoral Science Foundation (2020M682767; 2020M681269), the Science and Technology Development Fund, Macau SAR (SKL-IOTSC-2021-2023), the Natural Science Foundation of Guangdong Province (2019A1515011487), and the Fundamental Research Funds for the Central Universities (20184200031610059). We are grateful to Professor X. San Liang and Dr. Yang Yang for providing the MS-EVA toolbox and technical consultation. We also appreciate two anonymous reviewers for their insightful comments and Drs. Shantong Sun and Yukun Qian for discussions that improved this paper.
Data availability statement
The mooring data are available at https://doi.org/10.6084/m9.figshare.13525838. The HYCOM data can be accessed from https://www.hycom.org/dataserver/gofs-3pt1/analysis.
APPENDIX
Multiscale Energy and Vorticity Analysis in a Three-Window Framework
Expressions and physical meanings of each term in Eqs. (A13) and (A14) on window ϖ. Note that the colon operator is defined such that, for two dyadic products AB and CD, (AB):(CD) = (A ⋅ C)(B ⋅ D).



Energy cycle diagram for the local ocean domain in a three-window framework. Red, blue, and black arrows indicate canonical transfer between different scale windows, buoyancy conversion connecting the KE and APE reservoirs, and advective transport, respectively. Note that the forcing/dissipation processes in each window are not shown.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1

Energy cycle diagram for the local ocean domain in a three-window framework. Red, blue, and black arrows indicate canonical transfer between different scale windows, buoyancy conversion connecting the KE and APE reservoirs, and advective transport, respectively. Note that the forcing/dissipation processes in each window are not shown.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
Energy cycle diagram for the local ocean domain in a three-window framework. Red, blue, and black arrows indicate canonical transfer between different scale windows, buoyancy conversion connecting the KE and APE reservoirs, and advective transport, respectively. Note that the forcing/dissipation processes in each window are not shown.
Citation: Journal of Physical Oceanography 51, 6; 10.1175/JPO-D-20-0187.1
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